Publications 2018

University of Potsdam - Institute of Biochemistry and Biology- Bioinformatics group - Publications - 2018

Basler G, Fernie AR, Nikoloski Z.
Advances in metabolic flux analysis toward genome-scale profiling of higher organisms.
Biosci Rep. 2018 Nov 23;38(6). pii: BSR20170224.

Bents D, Groth D, Satake T.
The secular trend and network effects on height of male Japanese students from 1955 to 2015.
Anthropol Anz. 2018 Jun 11;74(5):423-429.

de Abreu E Lima F, Leifels L, Nikoloski Z.
Regression-Based Modeling of Complex Plant Traits Based on Metabolomics Data.
Methods Mol Biol. 2018;1778:321-327.

de Abreu E Lima F, Willmitzer L, Nikoloski Z.
Classification-driven framework to predict maize hybrid field performance from metabolic profiles of young parental roots.
PLoS One. 2018 Apr 26;13(4):e0196038.

de Abreu E Lima F, Li K, Wen W, Yan J, Nikoloski Z, Willmitzer L, Brotman Y.
Unraveling lipid metabolism in maize with time-resolved multi-omics data.
Plant J. 2018 Mar;93(6):1102-1115.

Hansen BO, Meyer EH, Ferrari C, Vaid N, Movahedi S, Vandepoele K, Nikoloski Z, Mutwil M.
Ensemble gene function prediction database reveals genes important for complex I formation in Arabidopsis thaliana.
New Phytol. 2018 Mar;217(4):1521-1534.

Hermanussen M, Scheffler C, Groth D, Bogin B.
Editorial Perceiving stunting - Student research and the "Lieschen Müller effect" in nutrition science.
Anthropol Anz. 2018 Jun 11;74(5):355-358.

Janowski M, Zoschke R, Scharff LB, Martinez Jaime S, Ferrari C, Proost S, Ng Wei Xiong J, Omranian N, Musialak-Lange M, Nikoloski Z, Graf A, Schöttler MA, Sampathkumar A, Vaid N, Mutwil M.
AtRsgA from Arabidopsis thaliana is important for maturation of the small subunit of the chloroplast ribosome.
Plant J. 2018 Oct;96(2):404-420.

Koziel S, Scheffler C, Tutkuviene J, Jakimaviciene EM, Mumm R, Barbieri D, Godina E, El-Shabrawi M, Elhusseini M, Musalek M, Pruszkowska-Przybylska P, El Dash HH, Safar HH, Lehmann A, Swanson J, Bogin B, Liu YC, Groth D, Kirchengast S, Siniarska A, Nieczuja-Dwojacka J, Králík M, Satake T, Hanć T, Roelants M, Hermanussen M.
Meeting Report: Growth and Social Environment. Proceedings of the 25th Aschauer Soiree, held at Krobielowice, Poland, November 18th 2017.
Pediatr Endocrinol Rev. 2018 Apr;15(4):319-329.

Küken A, Sommer F, Yaneva-Roder L, Mackinder LC, Höhne M, Geimer S, Jonikas MC, Schroda M, Stitt M, Nikoloski Z, Mettler-Altmann T.
Effects of microcompartmentation on flux distribution and metabolic pools in Chlamydomonas reinhardtii chloroplasts.
Elife. 2018 Oct 11;7. pii: e37960.

Liu YC, Groth D.
Body height, social dominance and the political climate - a comment.
Anthropol Anz. 2018 Jun 11;74(5):445-450.

Phan TTN, Nikoloski AN, Bahri PA, Li D.
Enhanced removal of organic using LaFeO3-integrated modified natural zeolites via heterogeneous visible light photo-Fenton degradation.
J Environ Manage. 2019 Mar 1;233:471-480.

Rodriguez Cubillos AE, Tong H, Alseekh S, de Abreu E Lima F, Yu J, Fernie AR, Nikoloski Z, Laitinen RAE.
Inheritance patterns in metabolism and growth in diallel crosses of Arabidopsis thaliana from a single growth habitat.
Heredity (Edinb). 2018 May;120(5):463-473.

Schedina IM, Groth D, Schlupp I, Tiedemann R.
The gonadal transcriptome of the unisexual Amazon molly Poecilia formosa in comparison to its sexual ancestors, Poecilia mexicana and Poecilia latipinna.
BMC Genomics. 2018 Jan 3;19(1):12.

Scheunemann M, Brady SM, Nikoloski Z.
Integration of large-scale data for extraction of integrated Arabidopsis root cell-type specific models.
Sci Rep. 2018 May 21;8(1):7919.

Schwahn K, Nikoloski Z.
Data Reduction Approaches for Dissecting Transcriptional Effects on Metabolism.
Front Plant Sci. 2018 Apr 20;9:538.

Vallarino JG, de Abreu E Lima F, Soria C, Tong H, Pott DM, Willmitzer L, Fernie AR, Nikoloski Z, Osorio S.
Genetic diversity of strawberry germplasm using metabolomic biomarkers.
Sci Rep. 2018 Sep 26;8(1):14386.

Wu S, Tohge T, Cuadros-Inostroza Á, Tong H, Tenenboim H, Kooke R, Méret M, Keurentjes JB, Nikoloski Z, Fernie AR, Willmitzer L, Brotman Y.
Mapping the Arabidopsis Metabolic Landscape by Untargeted Metabolomics at Different Environmental Conditions.
Mol Plant. 2018 Jan 8;11(1):118-134.