Publications 2011

University of Potsdam - Institute of Biochemistry and Biology- Bioinformatics group - Publications - 2011

G. Basler, O. Ebenhöh, J. Selbig and Z. Nikoloski (2011)
Mass-balanced randomization of metabolic networks.
Bioinformatics 27, 1397–1403.

J.G. Burleigh, M.S. Bansal, O. Eulenstein, S. Hartmann, A. Wehe and T.J. Vision (2011)
Genome-Scale Phylogenetics: Inferring the Plant Tree of Life from 18,896 Gene Trees.
Systematic Biology 60, 117–125.

G. Catchpole, A. Platzer, C. Weikert, C. Kempkensteffen, M. Johannsen, H. Krause, K. Jung, K. Miller, L. Willmitzer, J. Selbig and S. Weikert (2011)
Metabolic profiling reveals key metabolic features of renal cell carcinoma.
Journal of cellular and molecular medicine 15, 109–118.

M.E.R.P.D. Consortium, M. Bonizzoni, J. Bourjea, B. Chen, B.J. Crain, L. Cui, V. Fiorentino, S. Hartmann, S. Hendricks, V. Ketmaier, X. Ma, D. Muths, L. Pavesi, S. Pfautsch, M.A. Rieger, T. Santonastaso, J. Sattabongkot, C.H. Taron, D.J. Taron, R. Tiedemann, G. Yan, B. Zheng and D. Zhong (2011)
Permanent Genetic Resources added to Molecular Ecology Resources Database 1 April 2011–31 May 2011.
Molecular Ecology Resources 11, 935–936.

L. David, S.-A. Marashi, A. Larhlimi, B. Mieth and A. Bockmayr (2011)
FFCA: a feasibility-based method for flux coupling analysis of metabolic networks.
BMC Bioinformatics 12, 236.

S. Grimbs, A. Arnold, A. Koseska, J. Kurths, J. Selbig and Z. Nikoloski (2011)
Spatiotemporal dynamics of the Calvin cycle: Multistationarity and symmetry breaking instabilities.
Biosystems 103, 212–223.

C. Guziolowski, S. Blachon, T. Baumuratova, G. Stoll, O. Radulescu and A. Siegel (2011)
Designing logical rules to model the response of biomolecular networks with complex interactions: an application to cancer modeling.
IEEE/ACM transactions on computational biology and bioinformatics 8, 1223–1234.

W. Hoehenwarter, A. Larhlimi, J. Hummel, V. Egelhofer, J. Selbig, J.T. van Dongen, S. Wienkoop and W. Weckwerth (2011)
MAPA distinguishes genotype-specific variability of highly similar regulatory protein isoforms in potato tuber.
Journal of proteome research 10, 2979–2991.

K. Jürchott, K.-T. Guo, G. Catchpole, K. Feher, L. Willmitzer, C. Schichor and J. Selbig (2011)
Comparison of metabolite profiles in U87 glioma cells and mesenchymal stem cells.
Biosystems 105, 130–139.

A. Larhlimi, S. Blachon, J. Selbig and Z. Nikoloski (2011)
Robustness of metabolic networks: A review of existing definitions.
Biosystems 106, 1–8.

J. Lisec, L. Römisch-Margl, Z. Nikoloski, H.-P. Piepho, P. Giavalisco, J. Selbig, A. Gierl and L. Willmitzer (2011)
Corn hybrids display lower metabolite variability and complex metabolite inheritance patterns.
The Plant Journal 68, 326–336.

Z. Nikoloski, S. Grimbs, S. Klie and J. Selbig (2011)
Complexity of automated gene annotation.
Biosystems 104, 1–8.

C. Schudoma, A. Larhlimi and D. Walther (2011)
The influence of the local sequence environment on RNA loop structures.
RNA 17, 1247–1257.

T.H. Struck, C. Paul, N. Hill, S. Hartmann, C. Hösel, M. Kube, B. Lieb, A. Meyer, R. Tiedemann, G. Purschke and C. Bleidorn (2011)
Phylogenomic analyses unravel annelid evolution.
Nature 471, 95–98.