Publications 2009

University of Potsdam - Institute of Biochemistry and Biology- Bioinformatics group - Publications -2009

S. Andorf, T. Gärtner, M. Steinfath, H. Witucka-Wall, T. Altmann and D. Repsilber (2009)
Towards systems biology of heterosis: a hypothesis about molecular network structure applied for the Arabidopsis metabolome.
EURASIP journal on bioinformatics \& systems biology, 147157.

C. Bleidorn, N. Hill, C. Erséus and R. Tiedemann (2009)
On the role of character loss in orbiniid phylogeny (Annelida): molecules vs. morphology.
Molecular phylogenetics and evolution 52, 57–69.

C. Bleidorn, L. Podsiadlowski, M. Zhong, I. Eeckhaut, S. Hartmann, K.M. Halanych and R. Tiedemann (2009)
On the phylogenetic position of Myzostomida: can 77 genes get it wrong?.
BMC Evolutionary Biology 9, 150.

S. Bulik, S. Grimbs, C. Huthmacher, J. Selbig and H.G. Holzhütter (2009)
Kinetic hybrid models composed of mechanistic and simplified enzymatic rate laws-a promising method for speeding up the kinetic modelling of complex metabolic networks.
The FEBS journal 276, 410–424.

F. Cheng, S. Hartmann, M. Gupta, J.G. Ibrahim and T.J. Vision (2009)
A hierarchical model for incomplete alignments in phylogenetic inference.
Bioinformatics 25, 592–598.

L. Childs, Z. Nikoloski, P. May and D. Walther (2009)
Identification and classification of ncRNA molecules using graph properties.
Nucleic Acids Research 37, e66.

P. Durek, C. Schudoma, W. Weckwerth, J. Selbig and D. Walther (2009)
Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins.
BMC Bioinformatics 10, 117.

T. Gärtner, M. Steinfath, S. Andorf, J. Lisec, R.C. Meyer, T. Altmann, L. Willmitzer and J. Selbig (2009)
Improved Heterosis Prediction by Combining Information on DNA- and Metabolic Markers.
PLoS ONE 4.

J. Lisec, M. Steinfath, R.C. Meyer, J. Selbig, A.E. Melchinger, L. Willmitzer and T. Altmann (2009)
Identification of heterotic metabolite QTL in Arabidopsis thaliana RIL and IL populations.
The Plant Journal 59, 777–788.

P. May, J.-O. Christian, S. Kempa and D. Walther (2009)
ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii.
BMC genomics 10, 209.

C. Schröder, C. Bleidorn, S. Hartmann and R. Tiedemann (2009)
Occurrence of Can-SINEs and intron sequence evolution supports robust phylogeny of pinniped carnivores and their terrestrial relatives.
Gene 448, 221–226.

J. Selbig and S. Hartmann (2009)
Introductory Bioinformatics.
http://www.bod.de/index.php?id=1132\&objk\_id=237140.

J. Selbig, M. Steinfath and D. Repsilber (2009)
Network Structure and Biological Function: Reconstruction, Modeling, and Statistical Approaches.
EURASIP Journal on Bioinformatics and Systems Biology 2009, 714985.

R. Sulpice, E.-T. Pyl, H. Ishihara, S. Trenkamp, M. Steinfath, H. Witucka-Wall, Y. Gibon, B. Usadel, F. Poree, M.C. Piques, M.V. Korff, M.C. Steinhauser, J.J.B. Keurentjes, M. Guenther, M. Hoehne, J. Selbig, A.R. Fernie, T. Altmann and M. Stitt (2009)
Starch as a major integrator in the regulation of plant growth.
Proceedings of the National Academy of Sciences 106, 10348–10353.

J. Szymanski, S. Jozefczuk, Z. Nikoloski, J. Selbig, V. Nikiforova, G. Catchpole and L. Willmitzer (2009)
Stability of Metabolic Correlations under Changing Environmental Conditions in Escherichia coli – A Systems Approach.
PLoS ONE 4, e7441.