Publications 2004

University of Potsdam - Institute of Biochemistry and Biology- Bioinformatics group - Publications -2004

N. Beerenwinkel, J. Rahnenführer, M. Däumer, D. Hoffmann, R. Kaiser, J. Selbig and T. Lengauer (2004)
Learning multiple evolutionary pathways from cross-sectional data.
RECOMB '04,ACM, New York, NY, USA, 36–44.

C.O. Daub, R. Steuer, J. Selbig and S. Kloska (2004)
Estimating mutual information using B-spline functions – an improved similarity measure for analysing gene expression data.
BMC Bioinformatics 5, 118.

A. Flöter, J. Nicolas, T. Schaub and J. Selbig (2004)
Threshold extraction in metabolite concentration data.
Bioinformatics 20, 1491–1494.

A. Flöter, J. Selbig and T. Schaub (2004)
Finding Metabolic Pathways in Decision Forests.
In D. Baier and K.-D. Wernecke (ed.):Springer-Verlag, {Berlin/Heidelberg}, 199–206.

Y. Gibon, O.E. Blaesing, J. Hannemann, P. Carillo, M. Höhne, J.H.M. Hendriks, N. Palacios, J. Cross, J. Selbig and M. Stitt (2004)
A Robot-Based Platform to Measure Multiple Enzyme Activities in Arabidopsis Using a Set of Cycling Assays: Comparison of Changes of Enzyme Activities and Transcript Levels during Diurnal Cycles and in Prolonged Darkness.
The Plant Cell Online 16, 3304–3325.

A. Lüdemann, D. Weicht, J. Selbig and J. Kopka (2004)
PaVESy: Pathway Visualization and Editing System.
Bioinformatics 20, 2841–2844.

M. Scholz, S. Gatzek, A. Sterling, O. Fiehn and J. Selbig (2004)
Metabolite fingerprinting: detecting biological features by independent component analysis.
Bioinformatics 20, 2447–2454.

M. Scholz, Y. Gibon, M. Stitt and J. Selbig (2004)
Independent component analysis of starch deficient pgm mutants..
Proceedings of the German Conference on Bioinformatics,, Bielefeld, 95–104.

D. Steinhauser, B.H. Junker, A. Luedemann, J. Selbig and J. Kopka (2004)
Hypothesis-driven approach to predict transcriptional units from gene expression data.
Bioinformatics 20, 1928–1939.

O. Thimm, O. Bläsing, Y. Gibon, A. Nagel, S. Meyer, P. Krüger, J. Selbig, L.A. Müller, S.Y. Rhee and M. Stitt (2004)
MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes.
The Plant journal: for cell and molecular biology 37, 914–939.