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Group Publications (2014-2024)

 

2024

211. Kosch, T. A., Torres-Sánchez, M., Liedtke, H. C., Summers, K., Yun, M. H., Crawford, A. J., Maddock, S. T., Ahammed, M. S., Araújo, V. L. N., Bertola, L. V., Bucciarelli, G. M., Carné, A., Carneiro, C. M., Chan, K. O., Chen, Y., Crottini, A., da Silva, J. M., Denton, R. D., Dittrich, C., Espregueira Themudo, G., Farquharson, K. A., Forsdick, N. J., Gilbert, E., Che, J., Katzenback, B. A., Kotharambath, R., Levis, N. A., Márquez, R., Mazepa, G., Mulder, K. P., Müller, H., O'Connell, M. J., Orozco-terWengel, P., Palomar, G., Petzold, A., Pfennig, D. W., Pfennig, K. S., Reichert, M. S., Robert, J., Scherz, M. D., Siu-Ting, K., Snead, A. A., Stöck, M., Stuckert, A. M. M., Stynoski, J. L., Tarvin, R. D., & Wollenberg Valero, K. (2024). The Amphibian Genomics Consortium: advancing genomic and genetic resources for amphibian research and conservation. BMC Genomics, 25(1), 1025. https://doi.org/10.1186/s12864-024-10899-7.

210. Vences, M., Köhler, J., Hutter, C.R., Preick, M., Petzold, A., Rakotoarison, A., Ratsoavina, F.M., Glaw, F. and Scherz, M.D. (2024). Communicator whistles: A Trek through the taxonomy of the Boophis marojezensis complex reveals seven new, morphologically cryptic treefrogs from Madagascar (Amphibia: Anura: Mantellidae). Vertebrate Zoology, 74 (2024), 643-681.  https://doi.org/10.3897/vz.74.e121110

209. Zhang, L., Leonard, N., Passaro, R., Sy Luan, M., Van Tuyen, P., Ngoc Han, L. T., Cam, N. H., Vogelnest, L., Lynch, M., Fine, A. E., Nguyen Thi Thanh Nga, T., Nguyen Van Long, N., Rawson, B. M., Behie, A., VanNguyen, T., Le, M. D., Nadler, T., Walter, L., Marques-Bonet, T., Hofreiter, M., Li, M., Liu, Z., & Roos, C. (2024). Genomic adaptation to small population size and saltwater consumption in the critically endangered Cat Ba langur. Nature Communications , 15(1), 8531. doi.org/10.1038/s41467-024-52811-7

208. Parson, W., Amory, C., King, T., Preick, M., Berger, C., König, A., Huber, G., Anslinger, K., Bayer, B., Weichhold, G., Sänger, T., Lutz-Bonengel, S., Pfeiffer, H., Hofreiter, M., Pfründer, D., Hohoff, C., & Brinkmann, B. (2024). Kaspar Hauser’s alleged noble origin – New molecular genetic analyses resolve the controversy. iScience, 27(9), 110539. doi.org/10.1016/j.isci.2024.110539

207. Wagner, I., Smolina, I., Koop, M. E. L., Bal, T., Lizano, A. M., Qin Choo, L., Hofreiter, M., Gennari, E., de Sabata, E., Shivji, M. S., Noble, L. R., Jones, C. S., & Hoarau, G. (2024). Genome analysis reveals three distinct lineages of the cosmopolitan white shark. Current Biology, 34(15), 3582–3590.e4. https://doi.org/10.1016/j.cub.2024.06.076

206. Hagemann, J., Nogales, L. V., Hofreiter, M., & Arnold, P. (2024). Four-toed sengi (Petrodromus tetradactylus, Afrotheria, Mammalia) museomics reveals a crucial role of East African forests in macroscelidean diversification. Zoological Journal of the Linnean Society, 201(3), zlae081. https://doi.org/10.1093/zoolinnean/zlae081

205. Salado, I., Preick, M., Lupiáñez-Corpas, N., Fernández-Gil, A., Vilà, C., Hofreiter, M., & Leonard, J. A. (2024). Large variance in inbreeding within the Iberian wolf population. Journal of Heredity, 115(4), 349–359. https://doi.org/10.1093/jhered/esad071

204. Rakotoarivelo, A. R., Rambuda, T., Taron, U. H., Stalder, G., O’Donoghue, P., Robovský, J., Hartmann, S., Hofreiter, M., & Moodley, Y. (2024). Complex patterns of gene flow and convergence in the evolutionary history of the spiral-horned antelopes (Tragelaphini). Molecular Phylogenetics and Evolution, 198, 108131. https://doi.org/10.1016/j.ympev.2024.108131

203. Yuan, J., Hu, J., Liu, W., Chen, S., Zhang, F., Wang, S., Zhang, Z., Wang, L., Xiao, B., Li, F., Hofreiter, M., Lai, X., Westbury, M. V., & Sheng, G. (2024). Camelus knoblochi genome reveals the complex evolutionary history of Old World camels. Current Biology, 34 (11), 2502–2508.e5. https://doi.org/10.1016/j.cub.2024.04.050

202. Hempel, E., Faith, J. T., Preick, M., de Jager, D., Barish, S., Hartmann, S., Grau, J. H., Moodley, Y., Gedman, G., Morrill Pirovich, K., Bibi, F., Kalthoff, D. C., Bocklandt, S., Lamm, B., Dalén, L., Westbury, M. V., & Hofreiter, M. (2024). Colonial-driven extinction of the blue antelope despite genomic adaptation to low population size. Current Biology, 34(9), 2020–2029.e6. https://doi.org/10.1016/j.cub.2024.03.051

201. Bronner, G. N., Mynhardt, S., Bennett, N. C., Cohen, L., Crumpton, N., Hofreiter, M., Arnold, P., & Asher, R. J. (2024). Phylogenetic history of golden moles and tenrecs (Mammalia: Afrotheria). Zoological Journal of the Linnean Society, 201(1), 184–213. https://doi.org/10.1093/zoolinnean/zlad121

200. Torralba Sáez, M., Hofreiter, M., & Straube, N. (2024). Shark genome size evolution and its relationship with cellular, life-history, ecological, and diversity traits. Scientific Reports, 14, 8909. https://doi.org/10.1038/s41598-024-59202-4

199. Maraci, Ö., Antonatou-Papaioannou, A., Jünemann, S., Schneeberger, K., Schulze, M., Scheffler, I., & Caspers, B. A. (2024). Bats, bacteria, and bat smell V.2.0: Repeatable sex-specific differences in scent organ microbiota. Microbial Ecology, 87, 55. https://doi.org/10.1007/s00248-024-02368-1

198. Folkertsma, R., Charbonnel, N., Henttonen, H., Heroldová, M., Huitu, O., Kotlík, P., Manzo, E., Paijmans, J. L. A., Plantard, O., Sándor, A. D., Hofreiter, M., & Eccard, J. A. (2024). Genomic signatures of climate adaptation in bank voles. Ecology and Evolution, 14, e10886. https://doi.org/10.1002/ece3.10886

197. Vences, M., Anslan, S., Sabino-Pinto, J., Bonilla-Flores, M., Echeverría-Galindo, P., John, U., Nass, B., Pérez, L., Preick, M., Zhu, L., & Schwalb, A. (2024). Dataset from RNAseq analysis of differential gene expression among developmental stages of two non-marine ostracodes. Data in Brief, 53, 110070. https://doi.org/10.1016/j.dib.2024.110070

196. Lucena-Perez, M., Paijmans, J. L. A., Nocete, F., Nadal, J., Detry, C., Dalén, L., Hofreiter, M., Barlow, A., & Godoy, J. A. (2024). Recent increase in species-wide diversity after interspecies introgression in the highly endangered Iberian lynx. Nature Ecology and Evolution, 8(2), 282–292. https://doi.org/10.1038/s41559-023-02267-7

195. Arnold, P., Janiszewska, K., Li, Q., O’Connor, J. K., & Fostowicz-Frelik, Ł. (2024). The Late Cretaceous eutherian Zalambdalestes reveals unique axis and complex evolution of the mammalian neck. Science Bulletin , 69(11), 1767–1775. https://doi.org/10.1016/j.scib.2024.04.027

2023

194. Salado, I., Preick, M., Lupiáñez-Corpas, N., Fernández-Gil, A., Vilà, C., Hofreiter, M., & Leonard, J. A. (2023). Large variance in inbreeding within the Iberian wolf population. Journal of Heredity, esad071. https://doi.org/10.1093/jhered/esad071

193. Plaxton, L., Hempel, E., Marsh, W., Miguez, R. P., Waurick, I., Kitchener, A. C., Hofreiter, M., Lister, A. M., Zachos, F. E., & Brace, S. (2023). Assessing the identity of rare historical museum specimens of the extinct blue antelope (Hippotragus leucophaeus) using an ancient DNA approach. Mammalian Biology, 103, 549–560. https://doi.org/10.1007/s42991-023-00373-4

192. Westbury, M. V., Cabrera, A. A., Rey-Iglesia, A., De Cahsan, B., Duchêne, D. A., Hartmann, S., & Lorenzen, E. D. (2023). A genomic assessment of the marine-speciation paradox within the toothed whale superfamily Delphinoidea. Molecular Ecology, 32, 4829–4843. https://doi.org/10.1111/mec.17069

191. Major, T., Renk, P., Reissig, J., Paijmans, J. L. A., Morris, E., Hofreiter, M., Barlow, A., Broadley, D. G., & Wüster, W. (2023). Museum DNA reveals a new, potentially extinct species of rinkhals (Serpentes: Elapidae: Hemachatus) from the Eastern Highlands of Zimbabwe. PLoS ONE, 18(9), e0291432. doi.org/10.1371/journal.pone.0291432

190. Lin, H., Hu, J., Baleka, S., Yuan, J., Chen, X., Xiao, B., Song, S., Du, Z., Lai, X., Hofreiter, M., & Sheng, G. (2023). A genetic glimpse of the Chinese straight-tusked elephants. Biology Letters, 19(7), 20230078. doi.org/10.1098/rsbl.2023.0078

189. Hagemann, J., Hofreiter, M., Bibi, F., Holroyd, P., & Arnold, P. (2023). Is it inappropriate to ask for your age? Evaluating parameter impact on tree dating in a challenging clade (Macroscelidea). Molecular Phylogenetics and Evolution, 183, 107756. doi.org/10.1016/j.ympev.2023.107756

188. Kavcik-Graumann, N., Alberti, F., Döppes, D., Friedrich, R., Stockhammer, J., Lindauer, S., Hofreiter, M., & Rabeder, G. (2023). The cave bear fauna of the cave Schottloch (Dachstein Mountains, Austria). e-Research Reports of Museum Burg Golling , 12, 1–7.

187. Merten, L. J., Manafzadeh, A. R., Herbst, E. C., Amson, E., Tambusso, P. S., Arnold, P., & Nyakatura, J. A. (2023). The functional significance of aberrant cervical counts in sloths: Insights from automated exhaustive analysis of cervical range of motion. Proceedings of the Royal Society B: Biological Sciences , 290(2010), 20231592. doi.org/10.1098/rspb.2023.1592

186. Arnold, P. (2023). Wilhelm Peters‘ mysterious ‘Macroscelides intufi’ from Mozambique. Afrotherian Conservation, 18, 4–7.

185. Rakotoarison, A., Scherz, M. D., Mullin, K. E., Crottini, A., Petzold, A., Ranjanaharisoa, F. A., Maheritafika, H. M., Rafanoharana, J. M., Raherinjatovo, H., Andreone, F. R., & Glaw, F. R. (2023). Gray versus yellow ventral coloration: Identity, distribution, color polymorphism, and molecular relationships of the microhylid frog Platypelis mavomavo Andreone, Fenolio & Walvoord, 2003. Zootaxa, 5352(2), 221–234. doi.org/10.11646/zootaxa.5352.2.5

2022

184. Salado, I., Preick, M., Lupiáñez-Corpas, N., Fernández-Gil, A., Vilà, C., Hofreiter, M., Leonard, J.A. (2022). Loss of Mitochondrial Genetic Diversity despite Population Growth: The Legacy of Past Wolf Population Declines. Genes (Basel), 14(1), 75. doi.org/10.3390/genes14010075.

183. Hagemann, J., Conejero, C., Stillfried, M., Mentaberre, G., Castillo-Contreras, R., Fickel, J., & López-Olvera, J. R. (2022). Genetic population structure defines wild boar as an urban exploiter species in Barcelona, Spain. Science of The Total Environment, 833, 155126. doi.org/10.1016/j.scitotenv.2022.155126.

182. Scherz, M.D., Crottini, A., CARL, R., Hutter, C.R., Hildebrand, A., Andreone, F., Fulgence, T.R., Köhler, G., Ndriantsoa, S.H., Ohler, A., Preick, M., Rakotoarison, A., Rancilhac, L., Raselimanana, A.P., Riemann, J.C., Rödel, M.O., Rosa, G.M., Streicher, J.W., Vieites, D.R., Köhler, J., Hofreiter, M., Glaw, F., Vences, M. (2022). An inordinate fondness for inconspicuous brown frogs: integration of phylogenomics, archival DNA analysis, morphology, and bioacoustics yields 24 new taxa in the subgenus Brygoomantis (genus Mantidactylus) from Madagascar. Megataxa, 7(2), 113-311. doi.org/10.11646/megataxa.7.2.1 .

181. Hempel, E., Bibi, F., Faith, J.T., Koepfli, K.P., Klittich, A.M., Duchêne, D.A., Brink, J.S., Kalthoff, D.C., Dalén, L., Hofreiter, M., Westbury, M.V. (2022). Blue Turns to Gray: Paleogenomic Insights into the Evolutionary History and Extinction of the Blue Antelope (Hippotragus leucophaeus). Molecular Biology and Evolution, 39(12), msac241. https://doi.org/10.1093/molbev/msac241 .

180. Agne, S., Ekins, M., Galitz, A., Hofreiter, M., Preick, M., Straube, N., Wörheide, G., Erpenbeck, D. (2022). Keratose sponge MuseOMICS: setting reference points in dictyoceratid demosponge phylogeny. Zootaxa, 5195(3), 296-300. doi.org/10.11646/zootaxa.5195.3.9.

179. Arnold, P., Hagemann, J., Gilissen, E., Hofreiter, M. (2022). Otter shrew mitogenomes (Afrotheria, Potamogalidae) reconstructed from historical museum skins. Mitochondrial DNA Part B, 7(9), 1699-1701. doi.org/10.1080/23802359.2022.2122747.

178. Pérez-Escobar, O.A., Tusso, S., Przelomska, N.A.S., Wu, S., Ryan, P., Nesbitt, M., Silber, M.V., Preick, M., Fei, Z., Hofreiter, M., Chomicki, G., Renner, S.S. (2022). Genome Sequencing of up to 6,000-Year-Old Citrullus Seeds Reveals Use of a Bitter-Fleshed Species Prior to Watermelon Domestication. Mol Biol Evol., 39(8), msac168. doi.org/10.1093/molbev/msac168.

177. Bergström, A., Stanton, D.W.G., Taron, U.H., Frantz, L., Sinding, M.S., Ersmark, E., Pfrengle, S., Cassatt-Johnstone, M., Lebrasseur, O., Girdland-Flink, L., Fernandes, D.M., Ollivier, M., Speidel, L., Gopalakrishnan, S., Westbury, M.V., Ramos-Madrigal, J., Feuerborn, T.R., Reiter, E., Gretzinger, J., Münzel, S.C., Swali, P., Conard, N.J., Carøe, C., Haile, J., Linderholm, A., Androsov, S., Barnes, I., Baumann, C., Benecke, N., Bocherens, H., Brace, S., Carden, R.F., Drucker, D.G., Fedorov, S., Gasparik, M., Germonpré, M., Grigoriev, S., Groves, P., Hertwig, S.T., Ivanova, V.V., Janssens, L., Jennings, R.P., Kasparov, A.K., Kirillova, I.V., Kurmaniyazov, I., Kuzmin, Y.V., Kosintsev, P.A., Lázničková-Galetová, M., Leduc, C., Nikolskiy, P., Nussbaumer, M., O'Drisceoil, C., Orlando, L., Outram, A., Pavlova, E.Y., Perri, A.R., Pilot, M., Pitulko, V.V., Plotnikov, V.V., Protopopov, A.V., Rehazek, A., Sablin, M., Seguin-Orlando, A., Storå, J., Verjux, C., Zaibert, V.F., Zazula, G., Crombé, P., Hansen, A.J., Willerslev, E., Leonard, J.A., Götherström, A., Pinhasi, R., Schuenemann, V.J., Hofreiter, M., Gilbert, M.T.P., Shapiro, B., Larson, G., Krause, J., Dalén, L., Skoglund, P. (2022). Grey wolf genomic history reveals a dual ancestry of dogs. Nature, 607(7918), 313-320. doi.org/10.1038/s41586-022-04824-9 .

176. Hilgers, L., Hartmann, S., Pfaender, J., Lentge-Maaß, N., Marwoto, R.M., von Rintelen, T., Hofreiter, M. (2022). Evolutionary Divergence and Radula Diversification in Two Ecomorphs from an Adaptive Radiation of Freshwater Snails. Genes (Basel), 13(6), 1029. doi.org/10.3390/genes13061029.175. 

175. Le Duc, D., Velluva, A., Cassatt-Johnstone, M., Olsen, R.A., Baleka, S., Lin, C.C., Lemke, J.R., Southon, J.R., Burdin, A., Wang, M.S., Grunewald, S., Rosendahl, W., Joger, U., Rutschmann, S., Hildebrandt, T.B., Fritsch, G., Estes, J.A., Kelso, J., Dalén, L., Hofreiter, M., Shapiro, B., Schöneberg, T. (2022). Genomic basis for skin phenotype and cold adaptation in the extinct Steller's sea cow. Science Advances, 8(5), eabl6496. doi.org/10.1126/sciadv.abl6496.

174. Hou, X., Zhao, J., Zhang, H., Preick, M., Hu, J., Xiao, B., Wang, L., Deng, M., Sizhao Liu, S., Chang, F., Sheng, G.L., Lai, X.L., Hofreiter, M., Yuan, J. (2022). Paleogenomes Reveal a Complex Evolutionary History of Late Pleistocene Bison in Northeastern China. Genes (Basel), 13(10), 1684. https://doi.org/10.3390/genes13101684 .

173. Wang, J., Chen, X., Hou, X., Wang, J., Yue, W., Huang, S., Xu, G., Yan, J., Lu, G., Hofreiter, M., Li, C., Wang, C. (2022). “Omics” data unveil early molecular response underlying limb regeneration in the Chinese mitten crab, Eriocheir sinensis. Science Advances, 8(37), eabl4642. doi.org/10.1126/sciadv.abl4642.

172. Agne, S., Naylor, G.J.P., Preick, M., Yang, L., Thiel, R., Weigmann, S., Paijmans, J.L.A., Barlow, A., Hofreiter, M., Straube, N. (2022). Taxonomic Identification of Two Poorly Known Lantern Shark Species Based on Mitochondrial DNA from Wet-Collection Paratypes. Front. Ecol. Evol., 10, 910009. doi.org/10.3389/fevo.2022.910009.

171. Agne, S., Preick, M., Straube, N., Hofreiter, M. (2022). Simultaneous Barcode Sequencing of Diverse Museum Collection Specimens Using a Mixed RNA Bait Set. Front. Ecol. Evol., 10, 909846. https://doi.org/10.3389/fevo.2022.909846 .

170. Derežanin, L., Blažytė, A., Dobrynin, P., Duchêne, D.A., Grau, J.H., Jeon, J., Kliver, S., Koepfli, K.-P., Meneghini, D., Preick, M., Tomarovsky, A., Totikov, A., Fickel, J., Förster, D.W. (2024). Multiple types of genomic variation contribute to adaptive traits in the mustelid subfamily Guloninae. Molecular Ecology, 31, 2898–2919. https://doi.org/10.1111/mec.16443 .

169. Lucena-Perez, M., Bazzicalupo, E., Paijmans, J., Kleinman-Ruiz, D., Dalén, L., Hofreiter, M., Delibes, M., Clavero, M., Godoy, J.A. (2022). Ancient genome provides insights into the history of Eurasian lynx in Iberia and Western Europe. Quaternary Science Reviews, 285, 107518. https://doi.org/10.1016/j.quascirev.2022.107518 .

168. Stelbrink, B., Von Rintelen, T., Richter, K., Finstermeier, K., Frahnert, S., Cracraft, J., Hofreiter, M. (2022). Insights into the geographical origin and phylogeographical patterns of Paradisaea birds-of-paradise. Zoological Journal of the Linnean Society, 196(4), 1394–1407. https://doi.org/10.1093/zoolinnean/zlac010 .

167. Kavcik-Graumann, N., Alberti, F., Döppes, D., Fabbricatore, A., Friedrich, R., Hofreiter, M., Lindauer, S., Rosendahl, W., Rabeder, G. (2022). The cave bears from the Grotta dell’Orso near Gabrovizza (Trieste, Italy). Fossil bear remains of the collection Ludwig Karl Moser at the Natural History Museum Vienna. e-Research Reports of Museum Burg Golling, 7, 1-7.

166. Cornellas, A., Sánchez, E.B., Viñas, E.G., Westbury, M.V., Fages, A., Orlando, L., Hofreiter, M., Leonard, J.A. (2022). Estudio del ADN en los restos de fauna. Localización: El Neolítico en la Sierra Morena occidental: La Cueva Chica de Santiago (Cazalla de la Sierra, Sevilla). En J.L. Escacena Carrasco (Ed.), ISBN 978-84-472-2355-8, págs. 157-174.

165. Vences, M., Köhler, J., Crottini, A., Hofreiter, M., Hutter, C.R., du Preez, L., Preick, M., Rakotoarison, A., Rancilhac, L., Raselimanana, A.P., Rosa, G.M., Scherz, M.D., Glaw, F. (2022). An integrative taxonomic revision and redefinition of Gephyromantis (Laurentomantis) malagasius based on archival DNA analysis reveals four new mantellid frog species from Madagascar. Vertebrate Zoology, 72, 271–309. doi.org/10.3897/vz.72.e78830.

164. Arnold, P., Rutschmann, S. (2022). UCE sequencing-derived mitogenomes reveal the timing of mitochondrial replacement in Malagasy shrew tenrecs (Afrosoricida, Tenrecidae, Microgale). Mammalian Biology, 102(2), 531-536.

2021

163. Baleka, S., Varela, L., Tambusso, P. S., Paijmans, J. L. A., Mothé, D., Stafford, T. W. Jr., Fariña, R. A., Hofreiter, M. (2021). Revisiting proboscidean phylogeny and evolution through total evidence and palaeogenetic analyses including Notiomastodon ancient DNA. iScience, 25(1), 103559. doi.org/10.1016/j.isci.2021.103559

162. Scheffler, I. (2021). Aktuelle Nachweise von Laufkäfern (Coleoptera: Carabidae) im Nationalpark Unteres Odertal. Nationalparkstiftung Unteres Odertal, Jahrbuch 2021, 115-127.

161. Vences, M., Köhler, J., Andreone, F., Craul, A. C., Crottini, A., du Preez, L., Preick, M., Rancilhac, L., Rödel, M. O., Scherz, M. D., Streicher, J. W., Hofreiter, M., & Glaw, F. (2021). Target-enriched DNA sequencing clarifies the identity of name-bearing types of the Gephyromantis plicifer complex and reveals a new species of mantellid frog from Madagascar. Spixiana, 44(2), 175-202.

160. Krueger, J., Foerster, V., Trauth, M. H., Hofreiter, M., & Tiedemann, R. (2021). Exploring the Past Biosphere of Chew Bahir/Southern Ethiopia: Cross-Species Hybridization Capture of Ancient Sedimentary DNA from a Deep Drill Core. Frontiers in Earth Science, 9, 683010. doi.org/10.3389/feart.2021.683010

159. Wang, L., Sheng, G., Preick, M., Hu, S., Deng, T., Taron, U. H., Barlow, A., Hu, J., Xiao, B., Sun, G., Song, S., Hou, X., Lai, X., Hofreiter, M., & Yuan, J. (2021). Ancient Mitogenomes Provide New Insights into the Origin and Early Introduction of Chinese Domestic Donkeys. Frontiers in Genetics, 12, 759831. doi.org/10.3389/fgene.2021.759831

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157. Straube, N., Preick, M., Naylor, G. J. P., & Hofreiter, M. (2021). Mitochondrial DNA sequencing of a wet-collection syntype demonstrates the importance of type material as a genetic resource for lantern shark taxonomy (Chondrichthyes: Etmopteridae). Royal Society Open Science, 8(9), 210474. https://doi.org/10.1098/rsos.210474

156. Hempel, E., Westbury, M. V., Grau, J. H., Trinks, A., Paijmans, J. L. A., Kliver, S., Barlow, A., Mayer, F., Müller, J., Chen, L., Koepfli, K. P., Hofreiter, M., & Bibi, F. (2021). Diversity and paleodemography of the Addax (Addax nasomaculatus), a Saharan antelope on the verge of extinction. Genes (Basel), 12(8), 1236. https://doi.org/10.3390/genes12081236

155. Westbury, M.V., Le Duc, D., Duchêne, D.A., Krishnan, A., Prost, S., Rutschmann, S., Grau, J.H., Dalén, L., Weyrich, A., Norén, K., Werdelin, L., Dalerum, F., Schöneberg, T., Hofreiter, M. (2021). Ecological specialization and evolutionary reticulation in extant hyaenidae. Molecular Biology and Evolution, 38(9), 3884-3897. https://doi.org/10.1093/molbev/msab055

154. Hofreiter, M., Sneberger, J., Pospisek, M., & Vanek, D. (2021). Progress in forensic bone DNA analysis: Lessons learned from ancient DNA. Forensic Science International: Genetics, 54, 102538. https://doi.org/10.1016/j.fsigen.2021.102538

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152. Taron, U.H., Salado, I., Escobar-Rodríguez, M., Westbury, M.V., Butschkau, S., Paijmans, J.L.A., vonHoldt, B.M., Hofreiter, M., & Leonard, J.A. (2021). A sliver of the past: The decimation of the genetic diversity of the Mexican wolf. Molecular Ecology, 30(23), 6340-6354. https://doi.org/10.1111/mec.16037

151. Baleka, S., Herridge, V.L., Catalano, G., Lister, A.M., Dickinson, M.R., Di Patti, C., Barlow, A., Penkman, K.E.H., Hofreiter, M., & Paijmans, J.L.A. (2021). Estimating the dwarfing rate of an extinct Sicilian elephant. Current Biology, 31(16), 3606-3612.e7. https://doi.org/10.1016/j.cub.2021.05.037

150. Neumann, K., Blumenstein, C., Rolke, D., & Scheffler, I. (2021). Die aktuelle Bockkäferfauna im Raum Potsdam (Brandenburg). Veröffentlichungen des Naturkundemuseums Potsdam, 7, 49-69.

149. Smith, A. D., Kamiński, M. J., Kanda, K., Sweet, A. D., Betancourt, J. L., Holmgren, C. A., Hempel, E., Alberti, F., & Hofreiter, M. (2021). Recovery and analysis of ancient beetle DNA from subfossil packrat middens using high-throughput sequencing. Scientific Reports, 11(1), 12635. https://doi.org/10.1038/s41598-021-91896-8

148. Roos, C., Míguez, R. P., Sabin, R. Jr, EEL, Hofreiter, M., & Zinner, D. (2021). Mitogenomes of historical type specimens unravel the taxonomy of sportive lemurs (Lepilemur spp.) in Northwest Madagascar. Zoological Research, 42(4), 428-432. https://doi.org/10.24272/j.issn.2095-8137.2021.157

147. Straube, N., Lyra, M. L., Paijmans, J. L. A., Preick, M., Basler, N., Penner, J., Rödel, M. O., Westbury, M. V., Haddad, C. F. B., Barlow, A., & Hofreiter, M. (2021). Successful application of ancient DNA extraction and library construction protocols to museum wet collection specimens. Molecular Ecology Resources, 21(7), 2299-2315. https://doi.org/10.1111/1755-0998.13433

146. Gurke, M., Vidal-Gorosquieta, A., Pajimans, J. L. A., Wȩcek, K., Barlow, A., González-Fortes, G., Hartmann, S., Grandal-d'Anglade, A., & Hofreiter, M. (2021). Insight into the introduction of domestic cattle and the process of Neolithization to the Spanish region Galicia by genetic evidence. PLoS ONE, 16(4), e0249537. https://doi.org/10.1371/journal.pone.0249537

145. Paijmans, J. L. A., Barlow, A., Becker, M. S., Cahill, J. A., Fickel, J., Förster, D. W. G., Gries, K., Hartmann, S., Havmøller, R. W., Henneberger, K., Kern, C., Kitchener, A. C., Lorenzen, E. D., Mayer, F., O'Brien, S. J., von Seth, J., Sinding, M. S., Spong, G., Uphyrkina, O., Wachter, B., Westbury, M. V., Dalén, L., Bhak, J., Manica, A., & Hofreiter, M. (2021). African and Asian leopards are highly differentiated at the genomic level. Current Biology, 31(9), 1872-1882. https://doi.org/10.1016/j.cub.2021.03.084

144. Schneeberger, K., Schulze, M., Scheffler, I., & Caspers, B. A. (2021). Evidence of female preference for odor of distant over local males in a bat with female dispersal. Behavioral Ecology, 32(4), 657–661. https://doi.org/10.1093/beheco/arab003

143. van der Valk, T., Pečnerová, P., Díez-Del-Molino, D., Bergström, A., Oppenheimer, J., Hartmann, S., Xenikoudakis, G., Thomas, J. A., Dehasque, M., Sağlıcan, E., Fidan, F. R., Barnes, I., Liu, S., Somel, M., Heintzman, P. D., Nikolskiy, P., Shapiro, B., Skoglund, P., Hofreiter, M., Lister, A. M., Götherström, A., & Dalén, L. (2021). Million-year-old DNA sheds light on the genomic history of mammoths. Nature, 591(7849), 265-269. https://doi.org/10.1038/s41586-021-03224-9

142. Barlow, A., Paijmans, J. L. A., Alberti, F., Gasparyan, B., Bar-Oz, G., Pinhasi, R., Foronova, I., Puzachenko, A. Y., Pacher, M., Dalén, L., Baryshnikov, G., & Hofreiter, M. (2021). Middle Pleistocene genome calibrates a revised evolutionary history of extinct cave bears. Current Biology, 31(8), 1771-1779.e7. https://doi.org/10.1016/j.cub.2021.01.073

141. Döppes, D., Alberti, F., Barlow, A., Krutter, S., Friedrich, R., Hofreiter, M., Lindauer, S., Kavcik-Graumann, N., Rosendahl, W., & Rabeder, G. (2021). The late Pleistocene cave bear fauna of the Torrener Bärenhöhle in the northern alps (Salzburg, Austria). Historical Biology, 33(11), 3065-3074. https://doi.org/10.1080/08912963.2020.1849175

140. Hu, J., Westbury, M. V., Yuan, J., Zhang, Z., Chen, S., Xiao, B., Hou, X., Ji, H., Lai, X., Hofreiter, M., & Sheng, G. (2021). Ancient mitochondrial genomes from Chinese cave hyenas provide insights into the evolutionary history of the genus Crocuta. Proceedings of the Royal Society B: Biological Sciences, 288(1943), 20202934. https://doi.org/10.1098/rspb.2020.2934

139. Taron, U. H., Paijmans, J. L. A., Barlow, A., Preick, M., Iyengar, A., Drăgușin, V., Vasile, Ș., Marciszak, A., Roblíčková, M., & Hofreiter, M. (2021). Ancient DNA from the Asiatic wild dog (Cuon alpinus) from Europe. Genes, 12(2), 144. https://doi.org/10.3390/genes12020144

138. Hempel, E., Bibi, F., Faith, J. T., Brink, J. S., Kalthoff, D. C., Kamminga, P., Paijmans, J. L. A., Westbury, M. V., Hofreiter, M., & Zachos, F. E. (2021). Identifying the true number of specimens of the extinct blue antelope (Hippotragus leucophaeus). Scientific Reports, 11(1), 2100. https://doi.org/10.1038/s41598-020-80142-2

137. Arnold, P. (2021). Evolution of the mammalian neck from developmental, morpho-functional, and paleontological perspectives. Journal of Mammalian Evolution, 28(2), 173-183. https://doi.org/10.1007/s10914-020-09587-0

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136. Dussex, N., Alberti, F., Heino, M. T., Olsen, R. A., van der Valk, T., Ryman, N., Laikre, L., Ahlgren, H., Askeyev, I. V., Askeyev, O. V., Shaymuratova, D. N., Askeyev, A. O., Döppes, D., Friedrich, R., Lindauer, S., Rosendahl, W., Aspi, J., Hofreiter, M., Lidén, K., Dalén, L., & Díez-Del-Molino, D. (2020). Moose genomes reveal past glacial demography and the origin of modern lineages. BMC Genomics, 21(1), 854. doi.org/10.1186/s12864-020-07208-3

135. Yuan, J., Sheng, G. L., Preick, M., Sun, B., Hou, X., Chen, S., Taron, U. H., Barlow, A., Wang, L., Hu, J., Deng, T., Lai, X. L., & Hofreiter, M. (2020). Mitochondrial genomes of Late Pleistocene caballine horses from China belong to a separate clade. Quaternary Science Reviews, 250, 106691. doi.org/10.1016/j.quascirev.2020.106691

134. Roos, C., Helgen, K. M., Miguez, R. P., Thant, N. M. L., Lwin, N., Lin, A. K., Lin, A., Yi, K. M., Soe, P., Hein, Z. M., Myint, M. N. N., Ahmed, T., Chetry, D., Urh, M., Veatch, E. G., Duncan, N., Kamminga, P., Chua, M. A. H., Yao, L., Matauschek, C., Meyer, D., Liu, Z. J., Li, M., Nadler, T., Fan, P. F., Quyet, L. K., Hofreiter, M., Zinner, D., & Momberg, F. (2020). Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species. Zoological Research, 41(6), 656-669. doi.org/10.24272/j.issn.2095-8137.2020.254

132. Scherz, M. D., Rasolonjatovo, S. M., Köhler, J., Rancilhac, L., Rakotoarison, A., Raselimanana, A. P., Ohler, A., Preick, M., Hofreiter, M., Glaw, F., & Vences, M. (2020). 'Barcode fishing' for archival DNA from historical type material overcomes taxonomic hurdles, enabling the description of a new frog species. Scientific Reports, 10(1), 19109. doi.org/10.1038/s41598-020-75431-9

131. Rancilhac, L., Irisarri, I., Angelini, C., Arntzen, J. W., Babik, W., Bossuyt, F., Künzel, S., Lüddecke, T., Pasmans, F., Sanchez, E., Weisrock, D., Veith, M., Wielstra, B., Steinfartz, S., Hofreiter, M., Philippe, H., & Vences, M. (2020). Phylotranscriptomic evidence for pervasive ancient hybridization among Old World salamanders. Molecular Phylogenetics and Evolution, 155, 106967. doi.org/10.1016/j.ympev.2020.106967

130. Haruda, A. F., Ventresca Miller, A. R., Paijmans, J. L. A., Barlow, A., Tazhekeyev, A., Bilalov, S., Hesse, Y., Preick, M., King, T., Thomas, R., Härke, H., & Arzhantseva, I. (2020). The earliest domestic cat on the Silk Road. Scientific Reports, 10, 11241. https://doi.org/10.1038/s41598-020-67798-6

129. Hartmann, S., Preick, M., Abelt, S., Scheffel, A., & Hofreiter, M. (2020). Annotated genome sequences of the carnivorous plant Roridula gorgonias and a non-carnivorous relative, Clethra arborea. BMC Research Notes, 13(1), 426. doi.org/10.1186/s13104-020-05254-4

128. Hofreiter, M., & Hartmann, S. (2020). Reconstructing protein-coding sequences from ancient DNA. Methods in Enzymology, 642, 21-33. doi.org/10.1016/bs.mie.2020.05.008

127. Lyra, M. L., Lourenço, A. C. C., Pinheiro, P. D. P., Pezzuti, T. L., D., Barlow, A., Hofreiter, M., Pombal, J. P. jr., Haddad, C. F. B., & Faivovich, J. (2020). High-throughput DNA sequencing of museum specimens sheds light on the long-missing species of the Bokermannohyla claresignata group (Anura: Hylidae: Cophomantini). Zoological Journal of the Linnean Society, 190(4), 1235-1255. https://doi.org/10.1093/zoolinnean/zlaa033

126. Stanton, D. W. G., Alberti, F., Plotnikov, V., Androsov, S., Grigoriev, S., Fedorov, S., Kosintsev, P., Nagel, D., Vartanyan, S., Barnes, I., Barnett, R., Ersmark, E., Döppes, D., Germonpré, M., Hofreiter, M., Rosendahl, W., Skoglund, P., & Dalén, L. (2020). Early Pleistocene origin and extensive intra-species diversity of the extinct cave lion. Scientific Reports, 10(1), 12621. doi.org/10.1038/s41598-020-69474-1

125. Paijmans, J. L. A., Barlow, A., Henneberger, K., Fickel, J., Hofreiter, M., & Foerster, D. W. G. (2020). Ancestral mitogenome capture of the Southeast Asian banded linsang. PLOS ONE, 15(6), e0234385. doi.org/10.1371/journal.pone.0234385

124. Scheffler, I. (2020). Faunistische Untersuchungen im Gebiet der „Deetzer Erdelöcher“ und Umgebung (Brandenburg, Potsdam-Mittelmark, Mittlere Havel). Teil 4 Die Laufkäfer (Coleoptera, Carabidae) der Deetzer Erdelöcher. Veröffentlichungen des Naturkundemuseums Potsdam, 6, 49-55.

123. Dennis, A. B., Ballesteros, G. I., Robin, S., Schrader, L., Bast, J., Berghöfer, J., Beukeboom, L. W., Belghazi, M., Bretaudeau, A., Buellesbach, J., Cash, E., Colinet, D., Dumas, Z., Errbii, M., Falabella, P., Gatti, J.-L., Geuverink, E., Gibson, J. D., Hertaeg, C., Hartmann, S., Jacquin-Joly, E., Lammers, M., Lavandero, B. I., Lindenbaum, I., Massardier-Galata, L., Meslin, C., Montagné, N., Pak, N., Poirié, M., Salvia, R., Smith, C. R., Tagu, D., Tares, S., Vogel, H., Schwander, T., Simon, J.-C., Figueroa, C. C., Vorburger, C., Legeai, F., & Gadau, J. (2020). Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum. BMC Genomics, 21, 376. https://doi.org/10.1186/s12864-020-6764-0

122. Rancilhac, L., Bruy, T., Scherz, M. D., Pereira, E. A., Preick, M., Straube, N., Lyra, M. L., Ohler, A., Streicher, J. W., Andreone, F., Crottini, A., Hutter, C. R., Randrianantoandro, J. C., Rakotoarison, A., Glaw, F., Hofreiter, M., & Vences, M. (2020). Target-enriched DNA sequencing from historical type material enables a partial revision of the Madagascar giant stream frogs (genus Mantidactylus). Journal of Natural History, 54(1-4), 87-118. doi.org/10.1080/00222933.2020.1767213

121. Naito, Y. I., Meleg, I. N., Robu, M., Vlaicu, M., Drucker, D. G., Wißing, C., Hofreiter, M., Barlow, A., Bocherens, H. (2020). Heavy reliance on plants for Romanian cave bears evidenced by amino acid nitrogen isotope analysis. Scientific Reports, 10(1), 6612. doi.org/10.1038/s41598-020-62990-0

120. Westbury, M. V., Hartmann, S., Barlow, A., Preick, M., Ridush, B., Nagel, D., Rathgeber, T., Ziegler, R., Baryshnikov, G., Sheng, G., Ludwig, A., Wiesel, I., Dalén, L., Bibi, F., Werdelin, L., Heller, R., & Hofreiter, M. (2020). Hyena paleogenomes reveal a complex evolutionary history of cross-continental gene flow between spotted and cave hyena. Science Advances, 6(11), eaay0456. doi.org/10.1126/sciadv.aay0456

119. Xenikoudakis, G., Ahmed, M., Harris, J. C., Wadleigh, R., Paijmans, J. L. A., Hartmann, S., Barlow, A., Lerner, H., & Hofreiter, M. (2020). Ancient DNA reveals twenty million years of aquatic life in beavers. Current Biology, 30(3), R110-R111. doi.org/10.1016/j.cub.2019.12.041

118. Barlow, A., Hartmann, S., Gonzalez, J., Hofreiter, M., & Paijmans, J. L. A. (2020). Consensify: A method for generating pseudohaploid genome sequences from palaeogenomic datasets with reduced error rates. Genes (Basel) , 11(1), 50. doi.org/10.3390/genes11010050

117. De Cahsan, B., Westbury, M. V., Hofreiter, M., Norén, K., & Dalerum, F. (2020). Aardwolf population diversity and phylogenetic positioning inferred using complete mitochondrial genomes. African Journal of Wildlife Research, 49(1), 27-33. https://doi.org/10.3957/056.049.0027

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116. Thomas, J.E., Carvalho, G.R., Haile, J., Rawlence, N.J., Martin, M.D., Ho, S.Y., Sigfússon, A.Þ., Jósefsson, V.A., Frederiksen, M., Linnebjerg, J.F., Samaniego Castruita, J.A., Niemann, J., Sinding, M.S., Sandoval-Velasco, M., Soares, A.E., Lacy, R., Barilaro, C., Best, J., Brandis, D., Cavallo, C., Elorza, M., Garrett, K.L., Groot, M., Johansson, F., Lifjeld, J.T., Nilson, G., Serjeanston, D., Sweet, P., Fuller, E., Hufthammer, A.K., Meldgaard, M., Fjeldså, J., Shapiro, B., Hofreiter, M., Stewart, J.R., Gilbert, M.T.P., Knapp, M. (2019). Demographic reconstruction from ancient DNA supports rapid extinction of the great auk. Elife, 8, e47509. doi.org/10.7554/eLife.47509.

115. Paraskevopoulou, S., Dennis, A.B., Weithoff, G., Hartmann, S., & Tiedemann, R. (2019). Within species expressed genetic variability and gene expression response to different temperatures in the rotifer Brachionus calyciflorus sensu stricto. PLoS ONE, 14(9), e0223134. https://doi.org/10.1371/journal.pone.0223134 .

114. Chen, S.G., Li, J., Zhang, F., Xiao, B., Hu, J.M., Cui, Y.Q., Hofreiter, M., Hou, X.D., Sheng, G.L., Lai, X.L., Yuan, J.X. (2019). Different maternal lineages revealed by ancient mitochondrial genome of Camelus bactrianus from China. Mitochondrial DNA A DNA Mapp Seq Anal., 30(7), 786-793. doi.org/10.1080/24701394.2019.1659250.

113. Yuan, J.X., Hou, X.D., Barlow, A., Preick, M., Taron, U.H., Alberti, F., Basler, N., Deng, T., Lai, X.L., Hofreiter, M., Sheng, G.L. (2019). Molecular identification of late and terminal Pleistocene Equus ovodovi from northeastern China. PLoS One, 14(5), e0216883. doi.org/10.1371/journal.pone.0216883.

112. Sommer, R.S., Hofreiter, M., Krüger, F., Siemers, B.M., Paijmans, J.L.A., Li, C., Geige, M.F. (2019). Preliminary results on the molecular study of fish-eating by ‘trawling Myotis’ bat species in Europe. Senckenberg Gesellschaft für Naturforschung. https://doi.org/10.26049/vz69-1-2019-03 .

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110. Sheng, G.L., Basler, N., Ji, X.P., Paijmans, J.L.A., Alberti, F., Preick, M., Hartmann, S., Westbury, M.V., Yuan, J.X., Jablonski, N.G., Xenikoudakis, G., Hou, X.D., Xiao, B., Liu, J.H., Hofreiter, M., Lai, X.L., Barlow, A. (2019). Paleogenome reveals genetic contribution of extinct giant panda to extant populations. Curr Biol, 29(10), 1695-1700. doi.org/10.1016/j.cub.2019.04.021.

109. Sroka, P., Godunko, R.J., Rutschmann, S., Angeli, K.B., Salles, F.F., Gattolliat, J.-L. (2019). A new species of Bungona in Turkey (Ephemeroptera, Baetidae): an unexpected biogeographic pattern within a pantropical complex of mayflies. Zoosyst. Evol., 95(1), 1–13. doi.org/10.3897/zse.95.29487.

108. Henneberger, K., Barlow, A., Paijmans, J.L.A., Heintzman, P., Hofreiter, M., Shapiro, B. & Soares, A. (2019). Double-stranded library preparation for ancient and other degraded samples. (Eds.) Ancient DNA. Methods in Molecular Biology, vol 1963. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-9176-1_8 .

107. Paijmans, J.L.A., González-Fortes, G., Förster, D. (2019). Application of solid-state capture for the retrieval of small-to-medium sized target loci from ancient DNA. In Ancient DNA: methods and protocols. Second Edition. New York: Humana Press. https://doi.org/10.1007/978-1-4939-9176-1_14 .

106. González-Fortes, G., Paijmans, J.L.A. (2019). Whole-Genome Capture of Ancient DNA Using Homemade Baits. In Shapiro, B., Barlow, A., Heintzman, P., Hofreiter, M., Paijmans, J., Soares, A. (Eds.), Ancient DNA. Methods in Molecular Biology, vol 1963. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-9176-1_11 .

105. Breedveld, M.C., Folkertsma, R., Eccard, J.A. (2019). Rodent mothers increase vigilance behaviour when facing infanticide risk. Scientific Reports, 9(1), 12054. doi.org/10.1038/s41598-019-48459-9.

104. Fages, A., Hanghøj, K., Khan, N., Gaunitz, C., Seguin-Orlando, A., Leonardi, M., McCrory Constantz, C., Gamba, C., Al-Rasheid, K.A.S., Albizuri, S., Alfarhan, A.H., Allentoft, M., Alquraishi, S., Anthony, D., Baimukhanov, N., Barrett, J.H., Bayarsaikhan, J., Benecke, N., Bernáldez-Sánchez, E., Berrocal-Rangel, L., Biglari, F., Boessenkool, S., Boldgiv, B., Brem, G., Brown, D., Burger, J., Crubézy, E., Daugnora, L., Davoudi, H., de Barros Damgaard, P., de Los Ángeles de Chorro Y de Villa-Ceballos, M., Deschler-Erb, S., Detry, C., Dill, N., do Mar Oom, M., Dohr, A., Ellingvåg, S., Erdenebaatar, D., Fathi, H., Felkel, S., Fernández-Rodríguez, C., García-Viñas, E., Germonpré, M., Granado, J.D., Hallsson, J.H., Hemmer, H., Hofreiter, M., Kasparov, A., Khasanov, M., Khazaeli, R., Kosintsev, P., Kristiansen, K., Kubatbek, T., Kuderna, L., Kuznetsov, P., Laleh, H., Leonard, J.A., Lhuillier, J., Liesau von Lettow-Vorbeck, C., Logvin, A., Lõugas, L., Ludwig, A., Luis, C., Arruda, A.M., Marques-Bonet, T., Matoso Silva, R., Merz, V., Mijiddorj, E., Miller, B.K., Monchalov, O., Mohaseb, F.A., Morales, A., Nieto-Espinet, A., Nistelberger, H., Onar, V., Pálsdóttir, A.H., Pitulko, V., Pitskhelauri, K., Pruvost, M., Rajic Sikanjic, P., Rapan Papeša, A., Roslyakova, N., Sardari, A., Sauer, E., Schafberg, R., Scheu, A., Schibler, J., Schlumbaum, A., Serrand, N., Serres-Armero, A., Shapiro, B., Sheikhi Seno, S., Shevnina, I., Shidrang, S., Southon, J., Star, B., Sykes, N., Taheri, K., Taylor, W., Teegen, W.R., Trbojević Vukičević, T., Trixl, S., Tumen, D., Undrakhbold, S., Usmanova, E., Vahdati, A., Valenzuela-Lamas, S., Viegas, C., Wallner, B., Weinstock, J., Zaibert, V., Clavel, B., Lepetz, S., Mashkour, M., Helgason, A., Stefánsson, K., Barrey, E., Willerslev, E., Outram, A.K., Librado, P., Orlando, L. (2019). Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series. Cell, 177(6), 1419-1435. doi.org/10.1016/j.cell.2019.03.049 .

103. Shaw, B., Burrell, C.L., Green, D., Navarro-Martinez, A., Scott, D., Daroszewska, A., van ’t Hof, R., Smith, L., Hargrave, F., Mistry, S., Bottrill, A., Kessler, B.M., Fischer, R., Singh, A., Dalmay, T., Fraser, W.D., Henneberger, K., King, T., Gonzalez, S., Layfield, R. (2019). Molecular insights into an ancient form of Paget’s disease of bone. PNAS, 116(21), 10463-10472. https://doi.org/10.1073/pnas.1820556116 .

102. González-Fortes, G., Tassi, F., Trucchi, E., Henneberger, K., Paijmans, J.L.A., Díez-Del-Molino, D., Schroeder, H., Susca, R.R., Barroso-Ruíz, C., Bermudez, F.J., Barroso-Medina, C., Bettencourt, A.M.S., Sampaio, H.A., Grandal-d'Anglade, A., Salas, A., de Lombera-Hermida, A., Fabregas Valcarce, R., Vaquero, M., Alonso, S., Lozano, M., Rodríguez-Alvarez, X.P., Fernández-Rodríguez, C., Manica, A., Hofreiter, M., Barbujani, G. (2019). A western route of prehistoric human migration from Africa into the Iberian Peninsula. Proc Biol Sci., 286(1895), 20182288. doi.org/10.1098/rspb.2018.2288.

101. Signore, A.V., Paijmans, J.L.A., Hofreiter, M., Fago, A., Weber, R.E., Springer, M.S., Campbell, K.L. (2019). Emergence of a Chimeric Globin Pseudogene and Increased Hemoglobin Oxygen Affinity Underlie the Evolution of Aquatic Specializations in Sirenia. Mol Biol Evol., 36(6), 1134-1147. doi.org/10.1093/molbev/msz044.

100. Barlow, A., Sheng, G.L., Lai, X.L., Hofreiter, M., Paijmans, J.L.A. (2019). Once lost, twice found: Combined analysis of ancient giant panda sequences characterises extinct clade. Journal of Biogeography, 46, 251-253. doi.org/10.1111/jbi.13486.

99. Arnold, P. (2019). A short history of scientific illustrations of sengis. Afrotherian Conservation, 12, 14-17.

98. Wölfer, J., Arnold, P., Nyakatura, J.A. (2019). Effects of scaling and locomotor ecology suggests a complex evolution of the scapular morphology in sciuromorph rodents. Biological Journal of the Linnean Society, 127(2), 175-196.

97. Wölfer, J., Amson, E., Arnold, P., Botton-Divet, L., Fabre, A.C., van Heteren, A.H., Nyakatura, J.A. (2019). Femoral morphology of sciuromorph rodents in light of scaling and locomotor ecology. Journal of Anatomy, 234(6), 731-747.

96. Nyakatura, J.A., Melo, K., Horvat, T., Karakasiliotis, K., Allen, V.R., Andikfar, A., Andrada, E., Arnold, P., Lauströer, J., Hutchinson, J.R., Fischer, M.S., Ijspeert, A.J. (2019). Reverse engineering the locomotion of a stem amniote. Nature, 565, 351-355. https://doi.org/10.1038/s41586-019-0877-6.

2018

95. Paijmans, J.L.A., Barlow, A., Förster, D.W., Henneberger, K., Meyer, M., Nickel, B., Nagel, D., Worsøe Havmøller, R., Baryshnikov, G.F., Joger, U., Rosendahl, W., Hofreiter, M. (2018). Historical biogeography of the leopard (Panthera pardus) and its extinct Eurasian populations. BMC Evol Biol., 18(1), 156. doi.org/10.1186/s12862-018-1268-0.

94. Förster, D.W., Bull, J.K., Lenz, D., Autenrieth, M., Paijmans, J.L.A., Kraus, R.H.S., Nowak, C., Bayerl, H., Kuehn, R., Saveljev, A.P., Sindičić, M., Hofreiter, M., Schmidt, K., Fickel, J. (2018). Targeted resequencing of coding DNA sequences for SNP discovery in nonmodel species. Mol Ecol Resour., 18(6), 1356-1373. doi.org/10.1111/1755-0998.12924.

93. Autenrieth, M., Hartmann, S., Lah, L., Roos, A., Dennis, A.B., Tiedemann, R. (2018). High-quality whole-genome sequence of an abundant Holarctic odontocete, the harbour porpoise (Phocoena phocoena). Mol Ecol Resour., 18, 1469–1481. https://doi.org/10.1111/1755-0998.12932 .

92. Thorpe, R.S., Barlow, A., Surget-Groba, Y., Malhotra, A. (2018). Multilocus phylogeny, species age and biogeography of the Lesser Antillean anoles. Mol Phylogenet Evol., 127, 682-695. https://doi.org/10.1016/j.ympev.2018.06.014 .

91. Folkertsma, R., Westbury, M.V., Eccard, J.A., Hofreiter, M. (2018). The complete mitochondrial genome of the common vole, Microtus arvalis (Rodentia: Arvicolinae). Mitochondrial DNA B Resour., 3(1), 446-447. doi.org/10.1080/23802359.2018.1457994.

90. Wüster, W., Chirio, L., Trape, J.-F., Ineich, I., Jackson, K., Greenbaum, E., Barron, C., Kusamba, C., Nagy, Z.T., Storey, R., Hall, C., Wüster, C.E., Barlow, A., Broadley, D.G. (2018). Integration of nuclear and mitochondrial gene sequences and morphology reveals unexpected diversity in the forest cobra (Naja melanoleuca) species complex in Central and West Africa (Serpentes: Elapidae). Zootaxa , 4455(1), 068–098. https://doi.org/10.11646/zootaxa.4455.1.3 .

89. Eccard, J.A., Reil, D., Folkertsma, R., Schirmer, A. (2018). The scent of infanticide risk? Behavioural allocation to current and future reproduction in response to mating opportunity and familiarity with intruder. Behav Ecol Sociobiol., 72(11), 175. doi.org/10.1007/s00265-018-2585-4.

88. Taron, U.H., Lell, M., Barlow, A., Paijmans, J.L.A. (2018). Testing of Alignment Parameters for Ancient Samples: Evaluating and optimising mapping parameters for ancient samples using the TAPAS tool. Genes, 9, 157. https://doi.org/10.3390/genes9030157 .

87. Barlow, A., Cahill, J.A., Hartmann, S., Theunert, C., Xenikoudakis, G., Fortes, G.G., Paijmans, J.L.A., Rabeder, G., Frischauf, C., Grandal-d'Anglade, A., García-Vázquez, A., Murtskhvaladze, M., Saarma, U., Anijalg, P., Skrbinšek, T., Bertorelle, G., Gasparian, B., Bar-Oz, G., Pinhasi, R., Slatkin, M., Dalén, L., Shapiro, B., Hofreiter, M. (2018). Partial genomic survival of cave bears in living brown bears. Nature Ecol Evol., in press.

86. Alberti, F., Gonzalez, J., Paijmans, J.L.A., Basler, N., Preick, M., Henneberger, K., Trinks, A., Rabeder, G., Conard, N.J., Münzel, S.C., Joger, U., Fritsch, G., Hildebrandt, T., Hofreiter, M., Barlow, A. (2018). Optimized DNA sampling of ancient bones using Computed Tomography scans. Mol Ecol Resour., published online 7th June 2018. doi.org/10.1111/1755-0998.12911.

85. Eccard, J.A., Scheffler, I., Franke, S., Hoffmann, J. (2018). Off-grid: solar powered LED illumination impacts epigeal arthropods. Insect Conserv Divers., 11, 600-607. https://doi.org/10.1111/icad.12303 .

84. Beermann, J., Westbury, M.V., Hofreiter, M., Hilgers, L., Deister, F., Neumann, H., Raupach, M.J. (2018). Cryptic species in a well-known habitat: applying taxonomics to the amphipod genus Epimeria (Crustacea, Peracarida). Sci Rep., 8(1), 6893. doi.org/10.1038/s41598-018-25225-x.

83. Grau, J.H., Hackl, T., Koepfli, K.P., Hofreiter, M. (2018). Improving draft genome contiguity with reference-derived in silico mate-pair libraries. Gigascience, 7(5). doi.org/10.1093/gigascience/giy029.

82. Wutke, S., Sandoval-Castellanos, E., Benecke, N., Döhle, H.J., Friederich, S., Gonzalez, J., Hofreiter, M., Lõugas, L., Magnell, O., Malaspinas, A.S., Morales-Muñiz, A., Orlando, L., Reissmann, M., Trinks, A., Ludwig, A. (2018). Decline of genetic diversity in ancient domestic stallions in Europe. Sci Adv., 4(4), eaap9691. doi.org/10.1126/sciadv.aap9691.

81. Hilgers, L., Hartmann, S., Hofreiter, M., von Rintelen, T. (2018). Novel genes, ancient genes, and gene co-option contributed to the genetic basis of the radula, a molluscan innovation. Mol Biol Evol., 35(7), 1638-1652. doi.org/10.1093/molbev/msy052.

80. Sheng, G.L., Barlow, A., Cooper, A., Hou, X.D., Ji, X.P., Jablonski, N.G., Zhong, B.J., Liu, H., Flynn, L.J., Yuan, J.X., Wang, L.R., Basler, N., Westbury, M.V., Hofreiter, M., Lai, X.L. (2018). Ancient DNA from Giant Panda (Ailuropoda melanoleuca ) of South-Western China Reveals Genetic Diversity Loss during the Holocene. Genes (Basel), 9(4), E198. doi.org/10.3390/genes9040198.

79. Westbury, M.V., Hartmann, S., Barlow, A., Wiesel, I., Leo, V., Welch, R., Parker, D.M., Sicks, F., Ludwig, A., Dalén, L., Hofreiter, M. (2018). Extended and continuous decline in effective population size results in low genomic diversity in the world's rarest hyena species, the brown hyena. Mol Biol Evol., 35(5), 1225-1237. doi.org/10.1093/molbev/msy037.

78. Palkopoulou, E., Lipson, M., Mallick, S., Nielsen, S., Rohland, N., Baleka, S., Karpinski, E., Ivancevic, A.M., To, T.H., Kortschak, R.D., Raison, J.M., Qu, Z., Chin, T.J., Alt, K.W., Claesson, S., Dalén, L., MacPhee, R.D.E., Meller, H., Roca, A.L., Ryder, O.A., Heiman, D., Young, S., Breen, M., Williams, C., Aken, B.L., Ruffier, M., Karlsson, E., Johnson, J., Di Palma, F., Alfoldi, J., Adelson, D.L., Mailund, T., Munch, K., Lindblad-Toh, K., Hofreiter, M., Poinar, H., Reich, D. (2018). A comprehensive genomic history of extinct and living elephants. Proc Natl Acad Sci USA, 115(11), E2566-E2574. https://doi.org/10.1073/pnas.1720554115.

77. Gaunitz, C., Fages, A., Hanghøj, K., Albrechtsen, A., Khan, N., Schubert, M., Seguin-Orlando, A., Owens, I.J., Felkel, S., Bignon-Lau, O., de Barros Damgaard, P., Mittnik, A., Mohaseb, A.F., Davoudi, H., Alquraishi, S., Alfarhan, A.H., Al-Rasheid, K.A.S., Crubézy, E., Benecke, N., Olsen, S., Brown, D., Anthony, D., Massy, K., Pitulko, V., Kasparov, A., Brem, G., Hofreiter, M., Mukhtarova, G., Baimukhanov, N., Lõugas, L., Onar, V., Stockhammer, P.W., Krause, J., Boldgiv, B., Undrakhbold, S., Erdenebaatar, D., Lepetz, S., Mashkour, M., Ludwig, A., Wallner, B., Merz, V., Merz, I., Zaibert, V., Willerslev, E., Librado, P., Outram, A.K., & Orlando, L. (2018) Ancient genomes revisit the ancestry of domestic and Przewalski's horses. Science, 360 (6384), 111-114 (published online 22nd February 2018, doi: 10.1126/science.aao3297).

2017

76. Basler, N., Xenikoudakis, G., Westbury, M., Song, L., Sheng, G., & Barlow, A. (2017). Reduction of the contaminant fraction of DNA obtained from an ancient giant panda bone. BMC Research Notes, 10(1), 3061. doi.org/10.1186/s13104-017-3061-3

75. Paijmans, J.L.A., Baleka, S., Henneberger, K., Taron, U.H., Trinks, A., Westbury, M.V., & Barlow, A. (2017). Sequencing single-stranded libraries on the Illumina NextSeq 500 platform. arXiv, 1711.11004v1. https://doi.org/10.48550/arXiv.1711.11004

74. Paijmans, J.L.A., Barnett, R., Gilbert, M.T.P., Zepeda-Mendoza, M.L., Reumer, J.W.F., de Vos, J., Zazula, G., Nagel, D., Baryshnikov, G.F., Leonard, J.A., Rohland, N., Westbury, M.V., Barlow, A., & Hofreiter, M. (2017). Evolutionary history of saber-toothed cats based on ancient mitogenomics. Current Biology, 27(21), 3330-3336.e5. doi.org/10.1016/j.cub.2017.09.033

73. Casas-Marce, M., Marmesat, E., Soriano, L., Martínez-Cruz, B., Lucena, M., Nocete, F., Rodríguez-Hidalgo, A., Canals, A., Nadal, J., Detry, C., Bernáldez-Sánchez, E., Fernández-Rodríguez, C., Pérez-Ripoll, M., Stiller, M., Hofreiter, M., Rodríguez, A., Revilla, E., Delibes, M., & Godoy, J.A. (2017). Spatio-temporal dynamics of genetic variation in the Iberian lynx along its path to extinction reconstructed with ancient DNA. Molecular Biology and Evolution, 34(11), 2893-2907. doi.org/10.1093/molbev/msx222

72. Claesson, S., Baleka, S., Hofreiter, M., & Widga, C. (2017). The contribution of Late Pleistocene megafauna finds to submerged archaeology and the interpretation of ancient coastal landscapes. Journal of Archaeological Science: Reports, 15, 290-298. doi.org/10.1016/j.jasrep.2017.08.007

71. Xiang, H., Gao, J., Cai, D., Luo, Y., Yu, B., Liu, L., Liu, R., Zhou, H., Chen, X., Dun, W., Wang, X., Hofreiter, M., & Zhao, X. (2017). Origin and dispersal of early domestic pigs in northern China. Scientific Reports, 7(1), 5602. doi.org/10.1038/s41598-017-06056-8

70. Gaudry, M.J., Jastroch, M., Treberg, J.R., Hofreiter, M., Paijmans, J.L.A., Starrett, J., Wales, N., Signore, A.V., Springer, M.S., & Campbell, K.L. (2017). Inactivation of thermogenic UCP1 as a historical contingency in multiple placental mammal clades. Science Advances, 3(7), e1602878. doi.org/10.1126/sciadv.1602878

69. Westbury, M., Baleka, S., Barlow, A., Hartmann, S., Paijmans, J.L.A., Kramarz, A., Forasiepi, A.M., Bond, M., Gelfo, J.N., Reguero, M.A., Mendoza, P.L., Taglioretti, M., Scaglia, F., Rinderknecht, A., Jones, W., Mena, F., Billet, G., de Muizon, C., Aguilar, J.L., MacPhee, R.D.E., & Hofreiter, M. (2017). A mitogenomic timetree for Darwin's enigmatic South American mammal Macrauchenia patachonica. Nature Communications, 8, 15951. doi.org/10.1038/ncomms15951

68. Thomas, J.E., Carvalho, G.R., Haile, J., Martin, M.D., Castruita, J.A.S., Niemann, J., Sinding, M.S., Sandoval-Velasco, M., Rawlence, N.J., Fuller, E., Fjeldså, J., Hofreiter, M., Stewart, J.R., Gilbert, M.T.P., & Knapp, M. (2017). An "Aukward" tale: A genetic approach to discover the whereabouts of the last great auks. Genes (Basel), 8(6), E164. doi.org/10.3390/genes8060164

67. Westbury, M., Dalerum, F., Norén, K., & Hofreiter, M. (2017). Complete mitochondrial genome of a bat-eared fox (Otocyon megalotis), along with phylogenetic considerations. Mitochondrial DNA Part B, 2(1), 298-299. doi.org/10.1080/23802359.2017.1331325

66. Meyer, M., Palkopoulou, E., Baleka, S., Stiller, M., Penkman, K.E.H., Alt, K.W., Ishida, Y., Mania, D., Mallick, S., Meijer, T., Meller, H., Nagel, S., Nickel, B., Ostritz, S., Rohland, N., Schauer, K., Schüler, T., Roca, A.L., Reich, D., Shapiro, B., & Hofreiter, M. (2017). Palaeogenomes of Eurasian straight-tusked elephants challenge the current view of elephant evolution. eLife, 6 , e25413. doi.org/10.7554/eLife.25413

65. González-Fortes, G., Jones, E.R., Lightfoot, E., Bonsall, C., Lazar, C., Grandal-d'Anglade, A., Garralda, M.D., Drak, L., Siska, V., Simalcsik, A., Boroneanţ, A., Vidal Romaní, J.R., Vaqueiro Rodríguez, M., Arias, P., Pinhasi, R., Manica, A., & Hofreiter, M. (2017). Paleogenomic evidence for multi-generational mixing between Neolithic farmers and Mesolithic hunter-gatherers in the Lower Danube Basin. Current Biology, 27(12), 1801-1810. doi.org/10.1016/j.cub.2017.05.023

64. Elsner, J., Hofreiter, M., Schibler, J., & Schlumbaum, A. (2017). Ancient mtDNA diversity reveals specific population development of wild horses in Switzerland after the Last Glacial Maximum. PLoS ONE, 12(5), e0177458. doi.org/10.1371/journal.pone.0177458

63. Librado, P., Gamba, C., Gaunitz, C., Der Sarkissian, C., Pruvost, M., Albrechtsen, A., Fages, A., Khan, N., Schubert, M., Jagannathan, V., Serres-Armero, A., Kuderna, L.F.K., Povolotskaya, I.S., Seguin-Orlando, A., Lepetz, S., Neuditschko, M., Thèves, C., Alquraishi, S., Alfarhan, A.H., Al-Rasheid, K., Rieder, S., Samashev, Z., Francfort, H.P., Benecke, N., Hofreiter, M., Ludwig, A., Keyser, C., Marques-Bonet, T., Ludes, B., Crubézy, E., Leeb, T., Willerslev, E., & Orlando, L. (2017). Ancient genomic changes associated with domestication of the horse. Science, 356(6336), 442-445. doi.org/10.1126/science.aam5298

62. Dolotovskaya, S., Bordallo, J.T., Haus, T., Noll, A., Hofreiter, M., Zinner, D., & Roos, C. (2017). Comparing mitogenomic timetrees for two African savannah primate genera ( Chlorocebus and Papio). Zoological Journal of the Linnean Society. doi.org/10.1093/zoolinnean/zlx001

61. Chang, D., Knapp, M., Enk, J., Lippold, S., Kircher, M., Lister, A., MacPhee, R.D., Widga, C., Czechowski, P., Sommer, R., Hodges, E., Stümpel, N., Barnes, I., Dalén, L., Derevianko, A., Germonpré, M., Hillebrand-Voiculescu, A., Constantin, S., Kuznetsova, T., Mol, D., Rathgeber, T., Rosendahl, W., Tikhonov, A.N., Willerslev, E., Hannon, G., Lalueza-Fox, C., Joger, U., Poinar, H., Hofreiter, M., & Shapiro, B. (2017). The evolutionary and phylogeographic history of woolly mammoths: a comprehensive mitogenomic analysis. Scientific Reports, 7, 44585. doi.org/10.1038/srep44585

60. Siska, V., Jones, E.R., Jeon, S., Bhak, Y., Kim, H., Cho, Y.S., Kim, H., Lee, K., Veselovskaya, E., Balueva, T., Gallego-Llorente, M., Hofreiter, M., Bradley, D.G., Eriksson, A., Pinhasi, R., Bhak, J., & Manica, A. (2017). Genome-wide data from two early Neolithic East Asian individuals dating to 7,700 years ago. Science Advances, 3(2), e1601877. doi.org/10.1126/sciadv.1601877

59. Kehlmaier, C., Barlow, A., Hastings, A.K., Vamberger, M., Paijmans, J.L.A., Steadman, D.W., Albury, N.A., Franz, R., Hofreiter, M., & Fritz, U. (2017). Tropical ancient DNA reveals relationships of the extinct Bahamian giant tortoise Chelonoidis alburyorum. Proceedings of the Royal Society B: Biological Sciences, 284(1846), 20162235. doi.org/10.1098/rspb.2016.2235

58. Lah, L., Löber, U., Hsiang, T., & Hartmann, S. (2017). A genomic comparison of putative pathogenicity-related gene families in five members of the Ophiostomatales with different lifestyles. Fungal Biology, 121(3), 234-252. https://doi.org/10.1016/j.funbio.2016.12.002

2016

57. Wutke, S., Benecke, N., Sandoval-Castellano, E., Döhle, H.-J., Friederich, S., Gonzalez, J., Hallsteinn-Hallsson, J., Hofreiter, M., Lõugas, L., Magnell, O., Morales-Muniz, A., Orlando, L., Pálsdóttir, A., Reissmann, M., Ruttkay, M., Trinks, A., & Ludwig, A. (2016). Spotted phenotypes lost attractiveness in the Middle Ages. Scientific Reports, 6, 38548. doi.org/10.1038/srep38548.

56. Procter, D.S., Cottrell, J.E., Watts, K., A’Hara, S.W., Hofreiter, M., & Robinson, E.J.H. (2016). Does cooperation mean kinship between spatially discrete ant nests? Ecology and Evolution, 6(24), 8846-8856. doi.org/10.1002/ece3.2590.

55. Wecek, K., Hartmann, S., Paijmans, J.L.A., Taron, U., Xenikoudakis, G., Cahill, J.A., Heintzman, P.D., Shapiro, B., Baryshnikov, G., Bunevich, A.N., Crees, J.J., Manaserian, N., Okarma, H., Tokarska, M., Turvey, S.T., Wojcik, J.M., Zyla, W., Szymura, J.M., Hofreiter, M., & Barlow, A. (2016). Complex admixture preceded and followed the extinction of wisent in the wild. Molecular Biology and Evolution. doi.org/10.1093/molbev/msw254.

54. Barlow, A., Fortes, G.G., Dalén, L., Pinhasi, R., Gasparyan, B., Rabeder, G., Frischauf, C., Paijmans, J.L.A., & Hofreiter, M. (2016). Massive influence of DNA isolation and library preparation approaches on palaeogenomic sequencing data. bioRxiv , 1-41. https://doi.org/10.1101/075911 .

53. Fortes, G.G., Grandal-d'Anglade, A., Kolbe, B., Fernandes, D., Meleg, I.N., García-Vázquez, A., Pinto-Llona, A.C., Constantin, S., de Torres, T.J., Ortiz, J.E., Frischauf, C., Rabeder, G., Hofreiter, M., & Barlow, A. (2016). Ancient DNA reveals differences in behaviour and sociality between brown bears and extinct cave bears. Molecular Ecology, 25(19), 4907-4918. doi.org/10.1111/mec.13800.

52. Wutke, S., Andersson, L., Benecke, N., Sandoval-Castellanos, E., Gonzalez, J., Hallsson, J.H., Lõugas, L., Magnell, O., Morales-Muniz, A., Orlando, L., Pálsdóttir, A.H., Reissmann, M., Muñoz-Rodríguez, M.B., Ruttkay, M., Trinks, A., Hofreiter, M., & Ludwig A. (2016). The origin of ambling horses. Current Biology, 26(15), R697-9. doi.org/10.1016/j.cub.2016.07.001 .

51. Gallego-Llorente, M., Connell, S., Jones, E.R., Merrett, D.C., Jeon, Y., Eriksson, A., Siska, V., Gamba, C., Meiklejohn, C., Beyer, R., Jeon, S., Cho, Y.S., Hofreiter, M., Bhak, J., Manica, A., & Pinhasi, R. (2016). The genetics of an early Neolithic pastoralist from the Zagros, Iran. Scientific Reports, 6, 31326. doi.org/10.1038/srep31326.

50. Speller, C., van den Hurk, Y., Charpentier, A., Rodrigues, A., Gardeisen, A., Wilkens, B., McGrath, K., Rowsell, K., Spindler, L., Collins, M., & Hofreiter, M. (2016). Barcoding the largest animals on Earth: ongoing challenges and molecular solutions in the taxonomic identification of ancient cetaceans. Philosophical Transactions of the Royal Society B: Biological Sciences, 371(1702), 20150332. doi.org/10.1098/rstb.2015.0332.

49. Elsner, J., Deschler-Erb, S., Stopp, B., Hofreiter, M., Schibler, J., & Schlumbaum, A. (2016). Mitochondrial d-loop variation, coat colour and sex identification of Late Iron Age horses in Switzerland. Journal of Archaeological Science: Reports, 6, 386-396. https://doi.org/10.1016/j.jasrep.2016.03.007 .

48. Mohandesan, E., Speller, C.F., Peters, J., Uerpmann, H.P., Uerpmann, M., De Cupere, B., Hofreiter, M., & Burger, P.A. (2016). Combined hybridization capture and shotgun sequencing for ancient DNA analysis of extinct wild and domestic dromedary camel. Molecular Ecology Resources, 17(2), 300-313. doi.org/10.1111/1755-0998.12551.

47. Hilgers, L., Grau, J.H., Pfaender, J., & von Rintelen, T. (2016). The complete mitochondrial genome of the viviparous freshwater snail Tylomelania sarasinorum (Caenogastropoda: Cerithioidea). Mitochondrial DNA Part B, 1(1), 330-331. doi.org/10.1080/23802359.2016.1172046.

46. Almathen, F., Charruau, P., Mohandesan, E., Mwacharo, J.M., Orozco-terWengel, P., Pitt, D., Abdussamad, A.M., Uerpmann, M., Uerpmann, H.P., De Cupere, B., Magee, P., Alnaqeeb, M.A., Salim, B., Raziq, A., Dessie, T., Abdelhadi, O.M., Banabazi, M.H., Al-Eknah, M., Walzer, C., Faye, B., Hofreiter, M., Peters, J., Hanotte, O., & Burger, P.A. (2016). Ancient and modern DNA reveal dynamics of domestication and cross-continental dispersal of the dromedary. Proceedings of the National Academy of Sciences of the United States of America, 113(24), 6707-6712. doi.org/10.1073/pnas.1519508113.

45. Cui, P., Löber, U., Alquezar-Planas, D.E., Ishida, Y., Courtiol, A., Timms, P., Johnson, R.N., Lenz, D., Helgen, K.M., Roca, A.L., Hartmann, S., & Greenwood, A.D. (2016). Comprehensive profiling of retroviral integration sites using target enrichment methods from historical koala samples without an assembled reference genome. PeerJ, 4, e1847. https://doi.org/10.7717/peerj.1847 .

44. Rainford, J.L., Hofreiter, M., & Mayhew, P.J. (2016). Phylogenetic analyses suggest that diversification and body size evolution are independent in insects. BMC Evolutionary Biology, 16, 8. https://doi.org/10.1186/s12862-015-0570-3.

2015

43. Jones, E.R., Gonzalez-Fortes, G., Connell, S., Siska, V., Eriksson, A., Martiniano, R., McLaughlin, R.L., Gallego-Llorente, M., Cassidy, L.M., Gamba, C., Meshveliani, T., Bar-Yosef, O., Müller, W., Belfer-Cohen, A., Matskevich, Z., Jakeli, N., Higham, T.F., Currat, M., Lordkipanidze, D., Hofreiter, M., Manica, A., Pinhasi, R., & Bradley, D.G. (2015) Upper Palaeolithic genomes reveal deep roots of modern Eurasians. Nature Communications, 6, 8912. doi.org/10.1038/ncomms9912.

42. Gallego-Llorente, M., Jones, E.R., Eriksson, A., Siska, V., Arthur, K.W., Arthur, J.W., Curtis, M.C., Stock, J.T., Coltorti, M., Pieruccini, P., Stretton, S., Brock, F., Higham, T., Park, Y., Hofreiter, M., Bradley, D.G., Bhak, J., Pinhasi, R., & Manica, A. (2015) Ancient Ethiopian genome reveals extensive Eurasian admixture throughout the African continent. Science, 350(6262), 820-822. doi.org/10.1126/science.aad2879.

41. Li, C., Corrigan, S., Yang, L., Straube, N., Harris, M., Hofreiter, M., White, W., & Naylor, G.J.P. (2015) DNA capture reveals transoceanic gene flow in endangered river sharks. Proceedings of the National Academy of Sciences of the United States of America, 112(43), 13,302-13,307. doi.org/10.1073/pnas.1508735112.

40. Hartmann, S., Hasenkamp, N., Mayer, J., Michaux, J., Morand, S., Mazzoni, C.J., Roca, A.L., & Greenwood, A.D. (2015) Endogenous murine leukemia retroviral variation across wild European and inbred strains of house mouse. BMC Genomics, accepted.

39. Campbell, K.L., & Hofreiter, M. (2015) Resurrecting phenotypes from ancient DNA sequences: promises and perspectives. Canadian Journal of Zoology, 93(9), 701-710. doi.org/10.1139/cjz-2014-0337.

38. Le Duc, D., Renaud, G., Prüfer, K., Stenzel, U., Ongyerth, M., Krishnan, A., Sällman Almén, M., Schiöth, H.B., Huynen, L., Lambert, D., Hofreiter, M., Prohaska, S.J., Stadler, P.F., Kelso, J., & Schöneberg, T. (2015) Kiwi genome sequences provide insight into the evolution of a flightless, nocturnal ratite. Genome Biology, 16, 147. doi.org/10.1186/s13059-015-0711-4.

37. Pinhasi, R., Fernandes, D., Sirak, K., Novak, M., Connell, S., Alpaslan-Roodenberg, S., Gerritsen, F., Moiseyev, V., Gromov, A., Raczky, P., Anders, A., Pietrusewsky, M., Rollefson, G., Jovanovic, M., Trinhhoang, H., Bar-Oz, G., Oxenham, M., Matsumura, H., & Hofreiter, M. (2015) Optimal Ancient DNA Yields from the Inner Ear Part of the Human Petrous Bone. PLoS ONE, 10(6), e0129102. doi.org/10.1371/journal.pone.0129102.

36. Xenikoudakis, G., Ersmark, E., Tison, J.L., Waits, L., Kindberg, J., Swenson, J.E., & Dalén, L. (2015) Consequences of a demographic bottleneck on genetic structure and variation in the Scandinavian brown bear. Molecular Ecology, 24(13), 3441-3454. doi.org/10.1111/mec.13239.

35. Springer, M.S., Signore, A.V., Paijmans, J.L.A., Vélez-Juarbe, J., Domning, D.P., Bauer, C.E., He, K., Crerar, L., Campos, P.F., Murphy, W.J., Meredith, R.W., Gatesy, J., Willerslev, E., MacPhee, R.D., Hofreiter, M., & Campbell, K.L. (2015) Interordinal gene capture, the phylogenetic position of Steller's sea cow based on molecular and morphological data, and the macroevolutionary history of Sirenia. Molecular Phylogenetics and Evolution, 91, 178-193. doi.org/10.1016/j.ympev.2015.05.022 .

34. Paijmans, J.L.A., Fickel, J., Courtiol, A., Hofreiter, M., & Förster, D.W. (2015) Impact of enrichment conditions on cross-species capture of ancient, archival and fresh DNA. Molecular Ecology Resources, published online 27th April 2015. doi.org/10.1111/1755-0998.12420.

33. Zancolli, G., Baker, T.G., Barlow, A., Bradley, R.K., Calvete, J.J., Carter, K.C., de Jager, K., Owens, J.B., Price, J.F., Sanz, L., Scholes-Higham, A., Shier, L., Wood, L., Wüster, C.E., & Wüster, W. (2015) Is hybridization a source of adaptive venom variation in rattlesnakes? A test, using a Crotalus scutulatus × viridis hybrid zone in southwestern New Mexico. Toxins, 8(6), 188. doi.org/10.3390/toxins8060188.

32. Alter, S.E., Meyer, M., Post, K., Czechowski, P., Gravlund, P., Gaines, C., Rosenbaum, H., Turvey, S.T., van der Plicht, J., Shapiro, B., & Hofreiter, M. (2015) Ancient DNA reveals climate-driven trans-oceanic dispersal in gray whales. Molecular Ecology, 24(7), 1510-1522. doi.org/10.1111/mec.13121.

31. Knapp, M., Lalueza-Fox, C., & Hofreiter, M. (2015) Re-inventing ancient human DNA. Investigative Genetics, 6, 4. doi.org/10.1186/s13323-015-0020-4 .

30. Welcker, F., Collins, M.J., Thomas, J.A., Wadsley, M., Brace, B., Cappellini, E., Turvey, S.T., Reguero, M., Gelfo, J.N., Kramarz, A., Burger, J., Thomas-Oates, J., Ashford, D.A., Ashton, P., Rowsell, K., Porter, D.M., Kessler, B., Fisher, R., Baessmann, C., Kaspar, S., Olsen, J., Kiley, P., Elliot, J., Kelstrup, C., Mullin, V., Hofreiter, M., Willerslev, E., Hublin, J.-J., Orlando, L., Barnes, I., & MacPhee, R.D.E. (2015) Ancient proteins demonstrate South American ungulates are Laurasiatheres, not Afrotheres. Nature, 522(7554), 81-84. doi.org/10.1038/nature14249.

29. Thorpe, R.S., Barlow, A., Malhotra, A., & Surget-Groba, Y. (2015) Widespread parallel population adaptation to climate variation across a radiation: implications for adaptation to climate change. Molecular Ecology, 24(5), 1019-1030. doi.org/10.1111/mec.13093.

28. Xiang, H., Gao, J., Yu, B., Hofreiter, M., & Zhao, X. (2015) Reply to Peters et al.: Further discussions confirm early Holocene chicken domestication in northern China. Proceedings of the National Academy of Sciences of the United States of America, 112(19), E2416. doi.org/10.1073/pnas.1503956112.

27. Germonpré, M., Sablin, M.V., Lázničková-Galetová, M., Després, V., Stevens, R.E., Stiller, M., & Hofreiter, M. (2015) Palaeolithic dogs and Pleistocene wolves revisited: a reply to Morey (2014). Journal of Archaeological Science, 54, 210-216. doi.org/10.1016/j.jas.2014.11.035.

26. Xiang, H., Hofreiter, M., & Zhao, X. (2015) Reply to Peng et al.: Archaeological contexts should not be ignored for early chicken domestication. Proceedings of the National Academy of Sciences of the United States of America, 112(16), E1972-E1973. doi.org/10.1073/pnas.1502207112.

25. Hagelberg, E., Hofreiter, M., & Keyser, C. (2015) Ancient DNA: the first three decades. Philosophical Transactions of the Royal Society B: Biological Sciences, 370(1660), 20130371. doi.org/10.1098/rstb.2013.0371.

24. Ludwig, A., Reissmann, M., Benecke, N., Bellone, R., Sandoval-Castellanos, E., Cieslak, M., Fortes, G.G., Morales-Muñiz, A., Hofreiter, M., & Pruvost, M. (2015) 25,000 years of fluctuating selection on leopard complex spotting and congenital night blindness in horses. Philosophical Transactions of the Royal Society B: Biological Sciences, 370(1660), 20130386. https://doi.org/10.1098/rstb.2013.0386.

23. Teasdale, M.D., van Doorn, N.L., Fiddyment, S., Webb, C., O'Connor, T., Hofreiter, M., Collins, M.J. & Bradley, D.G. (2015) Reading the leaves: parchment as a reservoir of ancient DNA for next generation sequencing. Phil Trans R Soc B,370 (1660), 20130379 (doi: 10.1098/rstb.2013.0379).

22. Elsner, J., Schibler, J., Hofreiter, M. & Schlumbaum, A. (2015) Burial condition is the most important factor for mtDNA PCR amplification success in Palaeolithic equid remains from the Alpine foreland. Archaeological and Anthropological Sciences, 1-11 (DOI 10.1007/s12520-014-0213-4).

2014

21. Schubert, M., Jónsson, H., Chang, D., Der Sarkissian, C., Ermini, L., Ginolhac, A., Albrechtsen, A., Dupanloup, I., Foucal, A., Petersen, B., Raghavan, M., Seguin-Orlando, A., Korneliussen, T., Velazquez, A.M.V., Stenderup, J., Hoover, C.A., Rubin, C.J., Alfarhan, A.H., Alquraishi, S.A., Al-Rasheid, K.A.S., MacHugh, D.E., Kalbfleish, T., MacLeod, J.N., Rubin, E.M., Sicheritz-Ponten, T., Andersson, L., Hofreiter, M., Marques-Bonet, T., Gilbert, M.T.P., Nielsen, R., Excoffier, L., Willerslev, E., Shapiro, B., & Ludovic Orlando, L. (2014). Prehistoric horse genomes reveal the genetic foundation and cost of domestication. Proceedings of the National Academy of Sciences of the United States of America, 111 (52), E5661-9. doi: 10.1073/pnas.1416991111.

20. Hofreiter, M., Paijmans, J.L.A., Goodchild, H., Speller, C.F., Barlow, A., Fortes, G.G., Thomas, J.A., Ludwig, A., & Collins, M.J. (2014). The future of ancient DNA: Technical advances and conceptual shifts. BioEssays, 37(3), 284-293. doi: 10.1002/bies.201400160.

19. Xiang, H., Yuan, J., Gao, J., Yu, B., Luo, Y., Zhou, H., Cai, D., Zhang, Y., Chen, X., Wang, X., Hofreiter, M., & Zhao, X. (2014). Early Holocene chicken domestication in northern China. Proceedings of the National Academy of Sciences of the United States of America, 111(49), 17564-9. doi: 10.1073/pnas.1411882111.

18. King, T.E., Gonzalez Fortes, G., Balaresque, P., Thomas, M.G., Balding, D., Maisano Delser, P., Neumann, R., Parson, W., Knapp, M., Walsh, S., Tonasso, L., Holt, J., Kayser, M., Appleby, J., Forster, P., Ekserdjian, D., Hofreiter, M., & Schürer, K. (2014). Richard III: genetic evidence in context and the resolution of a mystery. Nature Communications, 5, 5631. doi: 10.1038/ncomms6631.

17. Elsner, J., Schibler, J., Hofreiter, M., & Schlumbaum, A. (2014). Preservation of ancient equid mtDNA in the alpine foreland/Switzerland: effects of sample age, storage time, site, and specimen types. Archaeological and Anthropological Sciences, 1-11. doi: 10.1007/s12520-014-0213-4.

16. Rainford, J.L., Hofreiter, M., Nicholson, D.B., & Mayhew, P.J. (2014). Diversification history of the extant insects. PLOS One, 9(10), e109085.

15. Gamba, C., Jones, E.R., Teasdale, M.D., McLaughlin, R.L., Gonzalez-Fortes, G., Mattiangeli, V., Domboróczki, L., Kővári, I., Pap, I., Anders, A., Whittle, A., Dani, J., Raczky, P., Higham, T.F.G., Hofreiter, M., Bradley, D.G., & Pinhasi, R. (2014). Genomic flux and stasis during five millennia of Hungarian prehistory. Nature Communications, 5, 5257. doi: 10.1038/ncomms6257.

14. Mitchell, K.J., Pratt, R.C., Watson, L.N., Gibb, G.C., Llamas, B., Kasper, M., Edson, J., Hopwood, B., Male, D., Armstrong, K., Meyer, M., Hofreiter, M., Austin, J., Donnellan, S.C., Lee, M.S.Y., Phillips, M.J., & Cooper, A. (2014). Phylogeny and macroevolution of the marsupials. Molecular Biology and Evolution, 31(9), 2322-2330. doi: 10.1093/molbev/msu176.

13. Huynen, L., Suzuki, T., Ogura, T., Watanabe, Y., Millar, C.D., Hofreiter, M., Smith, C., Mirmoeini, S., & Lambert, D.M. (2014). Reconstruction and in vivo analysis of the extinct tbx5 gene from ancient wingless moa (Aves: Dinornithiformes). BMC Evolutionary Biology, 14, 75.

12. Horn, S., Prost, S., Stiller, M., Makowiecki, D., Kusnetsova, T., Benecke, N., Pucher, E., Hufthammer, A.K., Schouwenburg, C., Shapiro, B., & Hofreiter, M. (2014). Ancient mitochondrial DNA and the genetic history of European beaver Castor fiber. Molecular Ecology, 23, 1717–1729. doi: 10.1111/mec.12691.

11. Shapiro, B., & Hofreiter, M. (2014). A paleogenomic perspective on evolution and gene function: New insights from ancient DNA. Science, 343, 1236573-1-7.

10. Stiller, M., Molak, M., Prost, S., Pacher, M., Rabeder, G., Baryshnikov, G., Rosendahl, W., Münzel, S., Bocherens, H., Grandal-d'Anglade, A., Hilpert, B., Germonpre, M., Stasyk, O., Pinhasi, R., Rohland, N., Mohandesan, E., Ho, S.Y.W., Hofreiter, M., & Knapp, M. (2014). Mitochondrial DNA diversity and evolution of the Pleistocene cave bear complex. Quaternary International, 339-340, 224-231. doi: 10.1016/j.quaint.2013.09.023.

9. Schedina, I.M., Pfautsch, S., Hartmann, S., Dolgener, N., Polgar, A., Bianco, P.G., Tiedemann, R., & Ketmaier, V. (2014). Isolation and characterization of eight microsatellite loci in the brook lamprey Lampetra planeri (Petromyzontiformes) using 454 sequence data. Journal of Fish Biology, 85(3), 960-964. doi: 10.1111/jfb.12470.

8. Zulawski, M., Schulze, G., Braginets, R., Hartmann, S., & Schulze, W.X. (2014). The Arabidopsis Kinome: phylogeny and evolutionary insights into functional diversification. BMC Genomics, 15, 548. doi: 10.1186/1471-2164-15-548.

7. Schedina, I.M., Hartmann, S., Groth, D., Schlupp, I., & Tiedemann, R. (2014). Comparative analysis of the gonadal transcriptomes of the all-female species Poecilia formosa and its maternal ancestor Poecilia mexicana. BMC Research Notes, 7, 249. doi: 10.1186/1756-0500-7-249.

6. Struck, T., Purschke, G., Hösel, C., Bleidorn, C., Paul, C., Hill, N., Tiedemann, R., Selbig, J., & Hartmann, S. (2014). Phylogeny and evolution of Annelida based on novel molecular data. In Deep Metazoan Phylogeny, De Gruyter, Pages 143-158.

5. Bleidorn, C., Helm, C., Weigert, A., Eeckhaut, I., Lanterbecq, D., Struck, T., Hartmann, S., & Tiedemann, R. (2014). From morphology to phylogenomics: placing the enigmatic Myzostomida in the tree of life. In Deep Metazoan Phylogeny, De Gruyter, Pages 161-172.

4. Knapp, M., & Hofreiter, M. (2014). Ancient Human DNA: Phylogenetic Applications. In Encyclopedia of Life Sciences, John Wiley & Sons, Ltd: Chichester UK. Retrieved from http://www.els.net/ (DOI: 10.1002/9780470015902.a0005143.pub3).

3. Hofreiter, M. (2014). Ancient DNA. In Oxford Bibliographies in Evolutionary Biology, Editor J. Losos, Oxford University Press, New York. Published online 13th January 2014 (DOI: 10.1093/OBO/9780199941728-0036).

2. Jenkins, D.L., Davis, L.G., Stafford, T.W. Jr., Connolly, T.J., Cummings, L.S., Hofreiter, M., Hockett, B., Jones, G.T., Gibbons, S.C., Raghavan, M., Rasmussen, M., McDonough, K., Luthe, I., O’Grady, P.W., Swisher, M.E., White, F., Yohe, R.M. II, Yost, C., & Willerslev, E. (2014). Geochronology, Archaeological Context, and DNA at the Paisley Caves. In The Paleoamerican Odyssey, Editors K.E. Graf, T. Goebel, and M.R. Waters, Center for the Study of First Americans, College Station, Texas.

1. Fortes, G.G., & Paijmans, J.L.A. (2015). Analysis of whole mitogenomes from ancient samples. Pp 179-195 in Whole Genome Amplification (Volume 1347 of the series Methods in Molecular Biology).  Editor T. Kroneis, Humana Press, USA.